Evolutionary pathways and trajectories in antibiotic resistance

F Baquero, JL Martinez, V F. Lanza… - Clinical Microbiology …, 2021 - Am Soc Microbiol
Evolution is the hallmark of life. Descriptions of the evolution of microorganisms have
provided a wealth of information, but knowledge regarding “what happened” has precluded …

Using phenotypic plasticity to understand the structure and evolution of the genotype–phenotype map

LM Chevin, C Leung, A Le Rouzic, T Uller - Genetica, 2022 - Springer
Deciphering the genotype–phenotype map necessitates relating variation at the genetic
level to variation at the phenotypic level. This endeavour is inherently limited by the …

[HTML][HTML] Genotype by environment interaction for gene expression in Drosophila melanogaster

W Huang, MA Carbone, RF Lyman, RRH Anholt… - Nature …, 2020 - nature.com
The genetics of phenotypic responses to changing environments remains elusive. Using
whole-genome quantitative gene expression as a model, here we study how the genetic …

On the effects of the modularity of gene regulatory networks on phenotypic variability and its association with robustness

U Hernández, L Posadas-Vidales, C Espinosa-Soto - Biosystems, 2022 - Elsevier
Biological adaptations depend on natural selection sorting out those individuals that exhibit
characters fit to their environment. Selection, in turn, depends on the phenotypic variation …

Computational modelling of plasticity-led evolution

ETH Ng, AR Kinjo - Biophysical Reviews, 2022 - Springer
Plasticity-led evolution is a form of evolution where a change in the environment induces
novel traits via phenotypic plasticity, after which the novel traits are genetically …

Correlated stabilizing selection shapes the topology of gene regulatory networks

AJR Petit, J Guez, A Le Rouzic - Genetics, 2023 - academic.oup.com
The evolution of gene expression is constrained by the topology of gene regulatory
networks, as co-expressed genes are likely to have their expressions affected together by …

[HTML][HTML] Evolution enhances mutational robustness and suppresses the emergence of a new phenotype: A new computational approach for studying evolution

T Kaneko, M Kikuchi - PLOS Computational Biology, 2022 - journals.plos.org
The aim of this paper is two-fold. First, we propose a new computational method to
investigate the particularities of evolution. Second, we apply this method to a model of gene …

[HTML][HTML] La ecología evolutiva del desarrollo en México

ER Álvarez-Buylla, A Garay-Arroyo… - Revista mexicana de …, 2017 - scielo.org.mx
La biología evolutiva se enfoca al estudio de los patrones de variación fenotípica
heredables dentro de las poblaciones y su dinámica en tiempos transgeneracionales …

[HTML][HTML] Early effects of gene duplication on the robustness and phenotypic variability of gene regulatory networks

YS Posadas-García, C Espinosa-Soto - BMC bioinformatics, 2022 - Springer
Background Research on gene duplication is abundant and comes from a wide range of
approaches, from high-throughput analyses and experimental evolution to bioinformatics …

Convergence Analysis and Network Properties of Wagner's Artificial Gene Regulatory Network Model

Y Wang - Journal of Advances in Mathematics and …, 2019 - info.stmdigitallibrary.com
The gene regulatory network (GRN) is essential to life, as it governs all levels of gene
products that enable cell survival and numerous cellular functions. Wagner's GRN model …