Principles and challenges of modeling temporal and spatial omics data

B Velten, O Stegle - Nature Methods, 2023 - nature.com
Studies with temporal or spatial resolution are crucial to understand the molecular dynamics
and spatial dependencies underlying a biological process or system. With advances in high …

Gene expression across mammalian organ development

M Cardoso-Moreira, J Halbert, D Valloton, B Velten… - Nature, 2019 - nature.com
The evolution of gene expression in mammalian organ development remains largely
uncharacterized. Here we report the transcriptomes of seven organs (cerebrum, cerebellum …

CAR-T cell therapy-related cytokine release syndrome and therapeutic response is modulated by the gut microbiome in hematologic malignancies

Y Hu, J Li, F Ni, Z Yang, X Gui, Z Bao, H Zhao… - Nature …, 2022 - nature.com
Immunotherapy utilizing chimeric antigen receptor T cell (CAR-T) therapy holds promise for
hematologic malignancies, however, response rates and associated immune-related …

Multi-omics approaches in immunological research

X Chu, B Zhang, VACM Koeken, MK Gupta… - Frontiers in …, 2021 - frontiersin.org
The immune system plays a vital role in health and disease, and is regulated through a
complex interactive network of many different immune cells and mediators. To understand …

Regeneration of fat cells from myofibroblasts during wound healing

MV Plikus, CF Guerrero-Juarez, M Ito, YR Li… - Science, 2017 - science.org
Although regeneration through the reprogramming of one cell lineage to another occurs in
fish and amphibians, it has not been observed in mammals. We discovered in the mouse …

Developmental dynamics of lncRNAs across mammalian organs and species

I Sarropoulos, R Marin, M Cardoso-Moreira… - Nature, 2019 - nature.com
Although many long noncoding RNAs (lncRNAs) have been identified in human and other
mammalian genomes, there has been limited systematic functional characterization of these …

Microglia actively remodel adult hippocampal neurogenesis through the phagocytosis secretome

I Diaz-Aparicio, I Paris, V Sierra-Torre… - Journal of …, 2020 - Soc Neuroscience
During adult hippocampal neurogenesis, most newborn cells undergo apoptosis and are
rapidly phagocytosed by resident microglia to prevent the spillover of intracellular contents …

Interferon subverts an AHR–JUN axis to promote CXCL13+ T cells in lupus

C Law, VS Wacleche, Y Cao, A Pillai, J Sowerby… - Nature, 2024 - nature.com
Systemic lupus erythematosus (SLE) is prototypical autoimmune disease driven by
pathological T cell–B cell interactions,. Expansion of T follicular helper (TFH) and T …

A high-resolution mRNA expression time course of embryonic development in zebrafish

RJ White, JE Collins, IM Sealy, N Wali, CM Dooley… - elife, 2017 - elifesciences.org
We have produced an mRNA expression time course of zebrafish development across 18
time points from 1 cell to 5 days post-fertilisation sampling individual and pools of embryos …

Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth

N Fàbregas, F Lozano-Elena… - Nature …, 2018 - nature.com
Drought represents a major threat to food security. Mechanistic data describing plant
responses to drought have been studied extensively and genes conferring drought …