Single-molecule studies of DNA mechanics

C Bustamante, SB Smith, J Liphardt, D Smith - Current opinion in structural …, 2000 - Elsevier
During the past decade, physical techniques such as optical tweezers and atomic force
microscopy were used to study the mechanical properties of DNA at the single-molecule …

Advances in Optical Single‐Molecule Detection: En Route to Supersensitive Bioaffinity Assays

Z Farka, MJ Mickert, M Pastucha… - Angewandte Chemie …, 2020 - Wiley Online Library
The ability to detect low concentrations of analytes and in particular low‐abundance
biomarkers is of fundamental importance, eg, for early‐stage disease diagnosis. The …

Molecular computation of solutions to combinatorial problems

LM Adleman - science, 1994 - science.org
The tools of molecular biology were used to solve an instance of the directed Hamiltonian
path problem. A small graph was encoded in molecules of DNA, and the" operations" of the …

Stretching DNA with optical tweezers

MD Wang, H Yin, R Landick, J Gelles, SM Block - Biophysical journal, 1997 - cell.com
Force-extension (Fx) relationships were measured for single molecules of DNA under a
variety of buffer conditions, using an optical trapping interferometer modified to incorporate …

Single-cell measurement of plasmid copy number and promoter activity

B Shao, J Rammohan, DA Anderson… - Nature …, 2021 - nature.com
Accurate measurements of promoter activities are crucial for predictably building genetic
systems. Here we report a method to simultaneously count plasmid DNA, RNA transcripts …

Force and velocity measured for single molecules of RNA polymerase

MD Wang, MJ Schnitzer, H Yin, R Landick, J Gelles… - Science, 1998 - science.org
RNA polymerase (RNAP) moves along DNA while carrying out transcription, acting as a
molecular motor. Transcriptional velocities for single molecules of Escherichia coli RNAP …

The organization of replication and transcription

PR Cook - Science, 1999 - science.org
Models for replication and transcription often display polymerases that track like locomotives
along their DNA templates. However, recent evidence supports an alternative model in …

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

MA Hall, A Shundrovsky, L Bai, RM Fulbright… - Nature structural & …, 2009 - nature.com
The nature of the nucleosomal barrier that regulates access to the underlying DNA during
many cellular processes is not fully understood. Here we present a detailed map of histone …

Probing individual molecules with confocal fluorescence microscopy

S Nie, DT Chiu, RN Zare - Science, 1994 - science.org
Confocal fluorescence microscopy coupled with a diffraction-limited laser beam and a high-
efficiency detection system has been used to study the diffusive movement and emission …

Transcription against an applied force

H Yin, MD Wang, K Svoboda, R Landick, SM Block… - Science, 1995 - science.org
The force produced by a single molecule of Escherichia coli RNA polymerase during
transcription was measured optically. Polymerase immobilized on a surface was used to …