Polymer translocation: the first two decades and the recent diversification

VV Palyulin, T Ala-Nissila, R Metzler - Soft matter, 2014 - pubs.rsc.org
Probably no other field of statistical physics at the borderline of soft matter and biological
physics has caused such a flurry of papers as polymer translocation since the 1994 …

Polymer translocation and nanopore sequencing: a review of advances and challenges

SL Singh, K Chauhan, AS Bharadwaj… - International Journal of …, 2023 - mdpi.com
Various biological processes involve the translocation of macromolecules across
nanopores; these pores are basically protein channels embedded in membranes …

[图书][B] Polymer translocation

M Muthukumar - 2016 - books.google.com
A reflection of the significant advances in the field, this book discusses the macromolecular
basis of polymer translocation that have emerged based on experimentation, new models …

Dynamics of driven polymer transport through a nanopore

K Chen, I Jou, N Ermann, M Muthukumar, UF Keyser… - Nature Physics, 2021 - nature.com
The transport of polymers across nanoscale pores underpins many biological processes,
such as the ejection of bacteriophage DNA into a host cell and the transfer of genes …

Single-polymer dynamics under constraints: scaling theory and computer experiment

A Milchev - Journal of Physics: Condensed Matter, 2011 - iopscience.iop.org
The relaxation, diffusion and translocation dynamics of single linear polymer chains in
confinement is briefly reviewed with emphasis on the comparison between theoretical …

Sucking genes into pores: Insight into driven translocation

T Sakaue - Physical Review E—Statistical, Nonlinear, and Soft …, 2010 - APS
Flexible polymers such as long DNA, RNA molecules, and proteins, can pass through a
narrow pore whose size is comparable to their molecular thickness. We highlight the …

Unifying model of driven polymer translocation

T Ikonen, A Bhattacharya, T Ala-Nissila, W Sung - Physical Review E …, 2012 - APS
We present a Brownian dynamics model of driven polymer translocation, in which
nonequilibrium memory effects arising from tension propagation (TP) along the cis side …

Pore translocation of knotted DNA rings

A Suma, C Micheletti - … of the National Academy of Sciences, 2017 - National Acad Sciences
We use an accurate coarse-grained model for DNA and stochastic molecular dynamics
simulations to study the pore translocation of 10-kbp–long DNA rings that are knotted. By …

Driven polymer translocation through nanopores: Slow-vs.-fast dynamics

K Luo, T Ala-Nissila, SC Ying, R Metzler - Europhysics letters, 2010 - iopscience.iop.org
We investigate the dynamics of polymer translocation through nanopores under external
driving by 3D Langevin Dynamics simulations, focusing on the scaling of the average …

Topological Jamming of Spontaneously Knotted Polyelectrolyte<? format?> Chains Driven Through a Nanopore

A Rosa, M Di Ventra, C Micheletti - Physical review letters, 2012 - APS
The advent of solid state nanodevices allows for interrogating the physicochemical
properties of a polyelectrolyte chain by electrophoretically driving it through a nanopore …