Tempo and mode of genome evolution in a 50,000-generation experiment

O Tenaillon, JE Barrick, N Ribeck, DE Deatherage… - Nature, 2016 - nature.com
Adaptation by natural selection depends on the rates, effects and interactions of many
mutations, making it difficult to determine what proportion of mutations in an evolving lineage …

Can the experimental evolution programme help us elucidate the genetic basis of adaptation in nature?

SF Bailey, T Bataillon - Molecular ecology, 2016 - Wiley Online Library
There have been a variety of approaches taken to try to characterize and identify the genetic
basis of adaptation in nature, spanning theoretical models, experimental evolution studies …

Core Genes Evolve Rapidly in the Long-Term Evolution Experiment with Escherichia coli

R Maddamsetti, PJ Hatcher, AG Green… - Genome biology and …, 2017 - academic.oup.com
Bacteria can evolve rapidly under positive selection owing to their vast numbers, allowing
their genes to diversify by adapting to different environments. We asked whether the same …

Core genes can have higher recombination rates than accessory genes within global microbial populations

AP Steinberg, M Lin, E Kussell - Elife, 2022 - elifesciences.org
Recombination is essential to microbial evolution, and is involved in the spread of antibiotic
resistance, antigenic variation, and adaptation to the host niche. However, assessing the …

The adaptation of Escherichia coli cells grown in simulated microgravity for an extended period is both phenotypic and genomic

MR Tirumalai, F Karouia, Q Tran, VG Stepanov… - npj …, 2017 - nature.com
Microorganisms impact spaceflight in a variety of ways. They play a positive role in
biological systems, such as waste water treatment but can be problematic through buildups …

Important genomic regions mutate less often than do other regions

J Zhang - 2022 - nature.com
Important genomic regions mutate less often than do other regions Skip to main content
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Comparative genomics of Staphylococcus aureus associated with subclinical and clinical bovine mastitis

LS Rocha, DM Silva, MP Silva, PMP Vidigal… - PLoS …, 2019 - journals.plos.org
Many efforts have been made to understand the pathogenesis of bovine mastitis to reduce
losses and promote animal welfare. Staphylococcus aureus may cause bovine clinical …

Hotspots of genetic change in Yersinia pestis

Y Wu, Y Xin, X Yang, K Song, Q Zhang, H Zhao… - Nature …, 2025 - nature.com
The relative contributions of mutation rate variation, selection, and recombination in shaping
genomic variation in bacterial populations remain poorly understood. Here we analyze 3318 …

Divergent Evolution of Mutation Rates and Biases in the Long-Term Evolution Experiment with Escherichia coli

R Maddamsetti, NA Grant - Genome biology and evolution, 2020 - academic.oup.com
All organisms encode enzymes that replicate, maintain, pack, recombine, and repair their
genetic material. For this reason, mutation rates and biases also evolve by mutation …

Analysis of bacterial genomes from an evolution experiment with horizontal gene transfer shows that recombination can sometimes overwhelm selection

R Maddamsetti, RE Lenski - PLoS genetics, 2018 - journals.plos.org
Few experimental studies have examined the role that sexual recombination plays in
bacterial evolution, including the effects of horizontal gene transfer on genome structure. To …