Mass spectrometry-based plasma proteomics: considerations from sample collection to achieving translational data

V Ignjatovic, PE Geyer, KK Palaniappan… - Journal of proteome …, 2019 - ACS Publications
The proteomic analysis of human blood and blood-derived products (eg, plasma) offers an
attractive avenue to translate research progress from the laboratory into the clinic. However …

Targeted protein quantitation in human body fluids by mass spectrometry

YT Chen, WR Liao, HT Wang… - Mass spectrometry …, 2023 - Wiley Online Library
Human body fluids (biofluids) contain various proteins, some of which reflect individuals'
physiological conditions or predict diseases. Therefore, the analysis of biofluids can provide …

A method for simplification of complex group causal loop diagrams based on endogenisation, encapsulation and order-oriented reduction

V Bureš - Systems, 2017 - mdpi.com
Growing complexity represents an issue that can be identified in various disciplines. In
system dynamics, causal loop diagrams are used for capturing dynamic nature of modelled …

A simple and rapid LC-MS/MS method for therapeutic drug monitoring of cetuximab: a GPCO-UNICANCER proof of concept study in head-and-neck cancer patients

F Becher, J Ciccolini, DC Imbs, C Marin, C Fournel… - Scientific Reports, 2017 - nature.com
Administration of first-in-class anti-EGFR monoclonal antibody cetuximab is contingent upon
extensive pharmacogenomic testing. However in addition to tumor genomics, drug exposure …

Plasma prefractionation methods for proteomic analysis and perspectives in clinical applications

S Chutipongtanate, S Chatchen… - PROTEOMICS–Clinical …, 2017 - Wiley Online Library
Plasma is a rich source of biomarkers with clinical relevance. However, the wide dynamic
range of protein concentration hinders the detection of low abundance proteins. Plasma …

Efficient microscale basic reverse phase peptide fractionation for global and targeted proteomics

HJ Lee, HJ Kim, DC Liebler - Journal of proteome research, 2016 - ACS Publications
Analysis of small biological samples would benefit from an efficient microscale fractionation
strategy that minimizes sample handling, transfer steps, and accompanying losses. Here we …

SWATH mass spectrometry for proteomics of non-depleted plasma

C Krisp, MP Molloy - Serum/plasma proteomics: methods and protocols, 2017 - Springer
The limitations commonly observed in data-dependent acquisition (DDA) mass
spectrometric investigation of non-depleted human plasma are mainly due to the large …

Quantitation of thrombin-activatable fibrinolysis inhibitor in human plasma by isotope dilution mass spectrometry

JX Wheeler, C Thelwell, P Rigsby, G Whiting - Analytical Biochemistry, 2022 - Elsevier
Measurement of Thrombin-activatable fibrinolysis inhibitor (TAFI) in human plasma is
dependent on reproducible assays. To date, standards for measuring TAFI are frequently …

The Use of Proteomics to Study Biomarkers of Stress and Welfare in Farm Animals

A Marco-Ramell, AM Gutiérrez, A Velarde… - Proteomics in Domestic …, 2018 - Springer
Animal welfare and stress are important issues mainly because of public perception,
marketing, product acceptance and production efficiency, quality and quantity. They are …

Retinal Ganglion Cell Axon Fractionation

SD Meehan, S Bhattacharya - Axon Regeneration: Methods and Protocols, 2023 - Springer
Retinal ganglion cell (RGC) axon regeneration in mammals can be stimulated through gene
knockouts, pharmacological agents, and biophysical stimulation. Here we present a …