[PDF][PDF] A simple guide to de novo transcriptome assembly and annotation
A transcriptome constructed from short-read RNA sequencing (RNA-seq) is an easily
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
Macrophage clearance of apoptotic cells: a critical assessment
S Gordon, A Plüddemann - Frontiers in immunology, 2018 - frontiersin.org
As the body continues to grow and age, it becomes essential to maintain a balance between
living and dying cells. Macrophages and dendritic cells play a central role in discriminating …
living and dying cells. Macrophages and dendritic cells play a central role in discriminating …
Biosynthesis of medicinal tropane alkaloids in yeast
P Srinivasan, CD Smolke - Nature, 2020 - nature.com
Tropane alkaloids from nightshade plants are neurotransmitter inhibitors that are used for
treating neuromuscular disorders and are classified as essential medicines by the World …
treating neuromuscular disorders and are classified as essential medicines by the World …
[HTML][HTML] Multi-omic analysis reveals divergent molecular events in scarring and regenerative wound healing
Regeneration is the holy grail of tissue repair, but skin injury typically yields fibrotic, non-
functional scars. Developing pro-regenerative therapies requires rigorous understanding of …
functional scars. Developing pro-regenerative therapies requires rigorous understanding of …
Aquatic and terrestrial cyanobacteria produce methane
Evidence is accumulating to challenge the paradigm that biogenic methanogenesis,
considered a strictly anaerobic process, is exclusive to archaea. We demonstrate that …
considered a strictly anaerobic process, is exclusive to archaea. We demonstrate that …
The axolotl genome and the evolution of key tissue formation regulators
Salamanders serve as important tetrapod models for developmental, regeneration and
evolutionary studies. An extensive molecular toolkit makes the Mexican axolotl (Ambystoma …
evolutionary studies. An extensive molecular toolkit makes the Mexican axolotl (Ambystoma …
Evolutionarily divergent mTOR remodels translatome for tissue regeneration
O Zhulyn, HD Rosenblatt, L Shokat, S Dai… - Nature, 2023 - nature.com
An outstanding mystery in biology is why some species, such as the axolotl, can regenerate
tissues whereas mammals cannot. Here, we demonstrate that rapid activation of protein …
tissues whereas mammals cannot. Here, we demonstrate that rapid activation of protein …
[HTML][HTML] Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution
ND Leigh, GS Dunlap, K Johnson, R Mariano… - Nature …, 2018 - nature.com
Regeneration of complex multi-tissue structures, such as limbs, requires the coordinated
effort of multiple cell types. In axolotl limb regeneration, the wound epidermis and blastema …
effort of multiple cell types. In axolotl limb regeneration, the wound epidermis and blastema …
The giant axolotl genome uncovers the evolution, scaling, and transcriptional control of complex gene loci
S Schloissnig, A Kawaguchi… - Proceedings of the …, 2021 - National Acad Sciences
Vertebrates harbor recognizably orthologous gene complements but vary 100-fold in
genome size. How chromosomal organization scales with genome expansion is unclear …
genome size. How chromosomal organization scales with genome expansion is unclear …
[HTML][HTML] Annelid functional genomics reveal the origins of bilaterian life cycles
Indirect development with an intermediate larva exists in all major animal lineages, which
makes larvae central to most scenarios of animal evolution,,,,,,,,–. Yet how larvae evolved …
makes larvae central to most scenarios of animal evolution,,,,,,,,–. Yet how larvae evolved …