Plant small RNAs: their biogenesis, regulatory roles, and functions

J Zhan, BC Meyers - Annual Review of Plant Biology, 2023 - annualreviews.org
Plant cells accumulate small RNA molecules that regulate plant development, genome
stability, and environmental responses. These small RNAs fall into three major classes …

Plant noncoding RNAs: hidden players in development and stress responses

Y Yu, Y Zhang, X Chen, Y Chen - Annual review of cell and …, 2019 - annualreviews.org
A large and significant portion of eukaryotic transcriptomes consists of noncoding RNAs
(ncRNAs) that have minimal or no protein-coding capacity but are functional. Diverse …

PhasiRNAs in plants: their biogenesis, genic sources, and roles in stress responses, development, and reproduction

Y Liu, C Teng, R Xia, BC Meyers - Plant Cell, 2020 - academic.oup.com
Phased secondary small interfering RNAs (phasiRNAs) constitute a major category of small
RNAs in plants, but most of their functions are still poorly defined. Some phasiRNAs, known …

Reproductive phasiRNAs regulate reprogramming of gene expression and meiotic progression in rice

YC Zhang, MQ Lei, YF Zhou, YW Yang, JP Lian… - Nature …, 2020 - nature.com
Plant spermatogenesis is a complex process that directly affects crop breeding. A rapid
change in gene abundance occurs at early meiosis prophase, when gene regulation is …

miR2118-dependent U-rich phasiRNA production in rice anther wall development

S Araki, NT Le, K Koizumi, A Villar-Briones… - Nature …, 2020 - nature.com
Reproduction-specific small RNAs are vital regulators of germline development in animals
and plants. MicroRNA2118 (miR2118) is conserved in plants and induces the production of …

A cascade of bHLH-regulated pathways programs maize anther development

GL Nan, C Teng, J Fernandes, L O'Connor… - The Plant …, 2022 - academic.oup.com
The spatiotemporal development of somatic tissues of the anther lobe is necessary for
successful fertile pollen production. This process is mediated by many transcription factors …

Tapetum-dependent male meiosis progression in plants: increasing evidence emerges

X Lei, B Liu - Frontiers in plant science, 2020 - frontiersin.org
In higher plants, male meiosis is a key process during microsporogenesis and is crucial for
male fertility and seed set. Meiosis involves a highly dynamic organization of chromosomes …

Biogenesis, functions, interactions, and resources of non-coding RNAs in plants

H Chao, Y Hu, L Zhao, S Xin, Q Ni, P Zhang… - International Journal of …, 2022 - mdpi.com
Plant transcriptomes encompass a large number of functional non-coding RNAs (ncRNAs),
only some of which have protein-coding capacity. Since their initial discovery, ncRNAs have …

mRNA cleavage by 21-nucleotide phasiRNAs determines temperature-sensitive male sterility in rice

C Shi, W Zou, Y Zhu, J Zhang, C Teng, H Wei… - Plant …, 2024 - academic.oup.com
Temperature-sensitive male sterility is one of the core components for hybrid rice (Oryza
sativa) breeding based on the 2-line system. We previously found that knockout of …

Computational methods for annotation of plant regulatory non-coding RNAs using RNA-seq

AT Vivek, S Kumar - Briefings in Bioinformatics, 2021 - academic.oup.com
Plant transcriptome encompasses numerous endogenous, regulatory non-coding RNAs
(ncRNAs) that play a major biological role in regulating key physiological mechanisms …