Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data

GB Gloor, G Reid - Canadian journal of microbiology, 2016 - cdnsciencepub.com
A workshop held at the 2015 annual meeting of the Canadian Society of Microbiologists
highlighted compositional data analysis methods and the importance of exploratory data …

Machine learning of mineralization-related geochemical anomalies: A review of potential methods

R Zuo - Natural Resources Research, 2017 - Springer
Research on processing geochemical data and identifying geochemical anomalies has
made important progress in recent decades. Fractal/multi-fractal models, compositional data …

[PDF][PDF] MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

A Dhariwal, J Chong, S Habib, IL King… - Nucleic acids …, 2017 - academic.oup.com
The widespread application of next-generation sequencing technologies has revolutionized
microbiome research by enabling high-throughput profiling of the genetic contents of …

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by …

AD Fernandes, JN Reid, JM Macklaim, TA McMurrough… - Microbiome, 2014 - Springer
Background Experimental designs that take advantage of high-throughput sequencing to
generate datasets include RNA sequencing (RNA-seq), chromatin immunoprecipitation …

Alterations in intestinal microbiota correlate with susceptibility to type 1 diabetes

AK Alkanani, N Hara, PA Gottlieb, D Ir… - Diabetes, 2015 - Am Diabetes Assoc
We tested the hypothesis that alterations in the intestinal microbiota are linked with the
progression of type 1 diabetes (T1D). Herein, we present results from a study performed in …

Analysis and mapping of geochemical anomalies using logratio-transformed stream sediment data with censored values

EJM Carranza - Journal of Geochemical Exploration, 2011 - Elsevier
There is lack of research and documentation of actual (as opposed to theoretical) benefits
(eg, mineral deposit discovery) of developments in compositional data analysis and …

Fuzzification of continuous-value spatial evidence for mineral prospectivity mapping

M Yousefi, EJM Carranza - Computers & Geosciences, 2015 - Elsevier
Complexities of geological processes portrayed as certain feature in a map (eg, faults) are
natural sources of uncertainties in decision-making for exploration of mineral deposits …

Quantifying the influence of biochar on the physical and hydrological properties of dissimilar soils

LR Peake, BJ Reid, X Tang - Geoderma, 2014 - Elsevier
Evidence suggests that biochar influences soil physical properties, especially soil hydrology,
yet relatively little data exists on this topic, especially in relation to soil type or characteristics …

[HTML][HTML] Geochemistry of formation waters from the Wolfcamp and “Cline” shales: Insights into brine origin, reservoir connectivity, and fluid flow in the Permian Basin …

MA Engle, FR Reyes, MS Varonka, WH Orem, L Ma… - Chemical …, 2016 - Elsevier
Despite being one of the most important oil producing provinces in the United States,
information on basinal hydrogeology and fluid flow in the Permian Basin of Texas and New …

The concept of compositional data analysis in practice—total major element concentrations in agricultural and grazing land soils of Europe

C Reimann, P Filzmoser, K Fabian, K Hron… - Science of the total …, 2012 - Elsevier
Applied geochemistry and environmental sciences invariably deal with compositional data.
Classically, the original or log-transformed absolute element concentrations are studied …