Revisiting criteria for plant microRNA annotation in the era of big data

MJ Axtell, BC Meyers - The Plant Cell, 2018 - academic.oup.com
Abstract MicroRNAs (miRNAs) are∼ 21-nucleotide-long regulatory RNAs that arise from
endonucleolytic processing of hairpin precursors. Many function as essential …

Roles of microRNAs in abiotic stress response and characteristics regulation of plant

F Zhang, J Yang, N Zhang, J Wu, H Si - Frontiers in Plant Science, 2022 - frontiersin.org
MicroRNAs (miRNAs) are a class of non-coding endogenous small RNAs (long 20–24
nucleotides) that negatively regulate eukaryotes gene expression at post-transcriptional …

Classification and comparison of small RNAs from plants

MJ Axtell - Annual review of plant biology, 2013 - annualreviews.org
Regulatory small RNAs, which range in size from 20 to 24 nucleotides, are ubiquitous
components of endogenous plant transcriptomes, as well as common responses to …

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

J Zhai, DH Jeong, E De Paoli, S Park… - Genes & …, 2011 - genesdev.cshlp.org
Legumes and many nonleguminous plants enter symbiotic interactions with microbes, and it
is poorly understood how host plants respond to promote beneficial, symbiotic microbial …

Evolution and Functional Diversification of MIRNA Genes

JT Cuperus, N Fahlgren, JC Carrington - The Plant Cell, 2011 - academic.oup.com
MicroRNAs (miRNAs) are small regulatory RNAs found in diverse eukaryotic lineages. In
plants, a minority of annotated MIRNA gene families are conserved between plant families …

ShortStack: comprehensive annotation and quantification of small RNA genes

MJ Axtell - Rna, 2013 - rnajournal.cshlp.org
Small RNA sequencing allows genome-wide discovery, categorization, and quantification of
genes producing regulatory small RNAs. Many tools have been described for annotation …

PsRobot: a web-based plant small RNA meta-analysis toolbox

HJ Wu, YK Ma, T Chen, M Wang… - Nucleic acids …, 2012 - academic.oup.com
Small RNAs (smRNAs) in plants, mainly microRNAs and small interfering RNAs, play
important roles in both transcriptional and post-transcriptional gene regulation. The broad …

The evolution of gene regulation by transcription factors and microRNAs

K Chen, N Rajewsky - Nature Reviews Genetics, 2007 - nature.com
Abstract Changes in the patterns of gene expression are widely believed to underlie many of
the phenotypic differences within and between species. Although much emphasis has been …

[PDF][PDF] Applications of next-generation sequencing technologies in functional genomics

O Morozova, MA Marra - Genomics, 2008 - core.ac.uk
Applications of next-generation sequencing technologies in functional genomics Page 1
Review Applications of next-generation sequencing technologies in functional genomics Olena …

Small RNAs and their roles in plant development

X Chen - Annual Review of Cell and Developmental, 2009 - annualreviews.org
Small RNAs of 20–30 nucleotides guide regulatory processes at the DNA or RNA level in a
wide range of eukaryotic organisms. Many, although not all, small RNAs are processed from …