[PDF][PDF] The CCP4 suite: integrative software for macromolecular crystallography

J Agirre, M Atanasova, H Bagdonas… - … Section D: Structural …, 2023 - journals.iucr.org
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective
with a mission to develop, test, distribute and promote software for macromolecular …

Structural basis and regulation of the reductive stress response

AG Manford, EL Mena, KY Shih, CL Gee, R McMinimy… - Cell, 2021 - cell.com
Although oxidative phosphorylation is best known for producing ATP, it also yields reactive
oxygen species (ROS) as invariant byproducts. Depletion of ROS below their physiological …

Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut

V Taleb, Q Liao, Y Narimatsu, A García-García… - Nature …, 2022 - nature.com
Mucinases of human gut bacteria cleave peptide bonds in mucins strictly depending on the
presence of neighboring O-glycans. The Akkermansia muciniphila AM0627 mucinase …

[PDF][PDF] Recent developments in MrBUMP: better search-model preparation, graphical interaction with search models, and solution improvement and assessment

RM Keegan, SJ McNicholas, JMH Thomas… - … Section D: Structural …, 2018 - journals.iucr.org
Increasing sophistication in molecular-replacement (MR) software and the rapid expansion
of the PDB in recent years have allowed the technique to become the dominant method for …

Ab initio phasing macromolecular structures using electron-counted MicroED data

MW Martynowycz, MTB Clabbers, J Hattne, T Gonen - Nature methods, 2022 - nature.com
Structures of two globular proteins were determined ab initio using microcrystal electron
diffraction (MicroED) data that were collected on a direct electron detector in counting mode …

X-Seed 4: updates to a program for small-molecule supramolecular crystallography

LJ Barbour - Journal of applied crystallography, 2020 - journals.iucr.org
X-Seed is a native Microsoft Windows program with three primary functions:(i) to serve as a
graphical user interface to the SHELX suite of programs,(ii) to facilitate exploration of crystal …

A conserved filamentous assembly underlies the structure of the meiotic chromosome axis

AMV West, SC Rosenberg, SN Ur, MK Lehmer, Q Ye… - Elife, 2019 - elifesciences.org
The meiotic chromosome axis plays key roles in meiotic chromosome organization and
recombination, yet the underlying protein components of this structure are highly diverged …

MS/MS-based molecular networking accelerated discovery of germacrane-type sesquiterpene lactones from Elephantopus scaber L

W Xu, M Bai, DF Liu, SY Qin, TM Lv, Q Li, B Lin… - Phytochemistry, 2022 - Elsevier
Assisted by an MS/MS-based molecular networking guided strategy, six undescribed
germacrane-type sesquiterpene lactones, namely scaberxones AF, along with a known …

An expandable, modular de novo protein platform for precision redox engineering

GH Hutchins, CEM Noble, HA Bunzel… - Proceedings of the …, 2023 - National Acad Sciences
The electron-conducting circuitry of life represents an as-yet untapped resource of exquisite,
nanoscale biomolecular engineering. Here, we report the characterization and structure of a …

Ethane-oxidising archaea couple CO2 generation to F420 reduction

ON Lemaire, G Wegener, T Wagner - Nature Communications, 2024 - nature.com
The anaerobic oxidation of alkanes is a microbial process that mitigates the flux of
hydrocarbon seeps into the oceans. In marine archaea, the process depends on sulphate …