Towards predicting equilibrium distributions for molecular systems with deep learning

S Zheng, J He, C Liu, Y Shi, Z Lu, W Feng, F Ju… - arXiv preprint arXiv …, 2023 - arxiv.org
Advances in deep learning have greatly improved structure prediction of molecules.
However, many macroscopic observations that are important for real-world applications are …

Score-based diffusion meets annealed importance sampling

A Doucet, W Grathwohl, AG Matthews… - Advances in Neural …, 2022 - proceedings.neurips.cc
More than twenty years after its introduction, Annealed Importance Sampling (AIS) remains
one of the most effective methods for marginal likelihood estimation. It relies on a sequence …

Predicting equilibrium distributions for molecular systems with deep learning

S Zheng, J He, C Liu, Y Shi, Z Lu, W Feng… - Nature Machine …, 2024 - nature.com
Advances in deep learning have greatly improved structure prediction of molecules.
However, many macroscopic observations that are important for real-world applications are …

Flow annealed importance sampling bootstrap

LI Midgley, V Stimper, GNC Simm, B Schölkopf… - arXiv preprint arXiv …, 2022 - arxiv.org
Normalizing flows are tractable density models that can approximate complicated target
distributions, eg Boltzmann distributions of physical systems. However, current methods for …

Transport meets variational inference: Controlled monte carlo diffusions

N Nusken, F Vargas, S Padhy… - The Twelfth International …, 2024 - kclpure.kcl.ac.uk
Connecting optimal transport and variational inference, we present a principled and
systematic framework for sampling and generative modelling centred around divergences …

Adaptive annealed importance sampling with constant rate progress

S Goshtasbpour, V Cohen… - … on Machine Learning, 2023 - proceedings.mlr.press
Abstract Annealed Importance Sampling (AIS) synthesizes weighted samples from an
intractable distribution given its unnormalized density function. This algorithm relies on a …

Langevin diffusion variational inference

T Geffner, J Domke - International Conference on Artificial …, 2023 - proceedings.mlr.press
Many methods that build powerful variational distributions based on unadjusted Langevin
transitions exist. Most of these were developed using a wide range of different approaches …

Improving mutual information estimation with annealed and energy-based bounds

R Brekelmans, S Huang, M Ghassemi… - arXiv preprint arXiv …, 2023 - arxiv.org
Mutual information (MI) is a fundamental quantity in information theory and machine
learning. However, direct estimation of MI is intractable, even if the true joint probability …