Sequence assembly demystified
N Nagarajan, M Pop - Nature Reviews Genetics, 2013 - nature.com
Advances in sequencing technologies and increased access to sequencing services have
led to renewed interest in sequence and genome assembly. Concurrently, new applications …
led to renewed interest in sequence and genome assembly. Concurrently, new applications …
SNP genotyping and population genomics from expressed sequences–current advances and future possibilities
With the rapid increase in production of genetic data from new sequencing technologies, a
myriad of new ways to study genomic patterns in nonmodel organisms are currently …
myriad of new ways to study genomic patterns in nonmodel organisms are currently …
Analysis of RNA-Seq data using TopHat and Cufflinks
S Ghosh, CKK Chan - Plant Bioinformatics: Methods and Protocols, 2016 - Springer
The recent advances in high throughput RNA sequencing (RNA-Seq) have generated huge
amounts of data in a very short span of time for a single sample. These data have required …
amounts of data in a very short span of time for a single sample. These data have required …
The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)
Background Snake venoms have significant impacts on human populations through the
morbidity and mortality associated with snakebites and as sources of drugs, drug leads, and …
morbidity and mortality associated with snakebites and as sources of drugs, drug leads, and …
Evaluation of de novo transcriptome assemblies from RNA-Seq data
B Li, N Fillmore, Y Bai, M Collins, JA Thomson… - Genome biology, 2014 - Springer
De novo RNA-Seq assembly facilitates the study of transcriptomes for species without
sequenced genomes, but it is challenging to select the most accurate assembly in this …
sequenced genomes, but it is challenging to select the most accurate assembly in this …
Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)
As a benthic filter-feeder of estuaries, the eastern oyster, Crassostrea virginica, faces
tremendous exposure to microbial pathogens. How eastern oysters without adaptive …
tremendous exposure to microbial pathogens. How eastern oysters without adaptive …
Assessing De Novo transcriptome assembly metrics for consistency and utility
Background Transcriptome sequencing and assembly represent a great resource for the
study of non-model species, and many metrics have been used to evaluate and compare …
study of non-model species, and many metrics have been used to evaluate and compare …
Optimized deep-targeted proteotranscriptomic profiling reveals unexplored Conus toxin diversity and novel cysteine frameworks
V Lavergne, I Harliwong, A Jones… - Proceedings of the …, 2015 - National Acad Sciences
Cone snails are predatory marine gastropods characterized by a sophisticated venom
apparatus responsible for the biosynthesis and delivery of complex mixtures of cysteine-rich …
apparatus responsible for the biosynthesis and delivery of complex mixtures of cysteine-rich …
Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa
Introduction Traditionally, genomic or transcriptomic data have been restricted to a few
model or emerging model organisms, and to a handful of species of medical and/or …
model or emerging model organisms, and to a handful of species of medical and/or …
De Novo Sequencing and Transcriptome Analysis of the Central Nervous System of Mollusc Lymnaea stagnalis by Deep RNA Sequencing
H Sadamoto, H Takahashi, T Okada, H Kenmoku… - 2012 - journals.plos.org
The pond snail Lymnaea stagnalis is among several mollusc species that have been well
investigated due to the simplicity of their nervous systems and large identifiable neurons …
investigated due to the simplicity of their nervous systems and large identifiable neurons …