Verifiable biology

S Konur, M Gheorghe… - Journal of the Royal …, 2023 - royalsocietypublishing.org
The formalization of biological systems using computational modelling approaches as an
alternative to mathematical-based methods has recently received much interest because …

Spiking neural P systems: matrix representation and formal verification

M Gheorghe, R Lefticaru, S Konur, IM Niculescu… - Journal of Membrane …, 2021 - Springer
Structural and behavioural properties of models are very important in development of
complex systems and applications. In this paper, we investigate such properties for some …

[HTML][HTML] kPWorkbench: A software suit for membrane systems

S Konur, L Mierlă, F Ipate, M Gheorghe - SoftwareX, 2020 - Elsevier
Membrane computing is a new natural computing paradigm inspired by the functioning and
structure of biological cells, and has been successfully applied to many different areas, from …

Search-based testing in membrane computing

A Ţurlea, M Gheorghe, F Ipate, S Konur - Journal of Membrane Computing, 2019 - Springer
Search-based testing is widely used for generating test sets. It is also applied in the case of
model-based testing, especially for (extended) finite state machines. In this paper, we define …

Modelling and validating an engineering application in kernel P systems

R Lefticaru, ME Bakir, S Konur, M Stannett… - … Conference, CMC 2017 …, 2018 - Springer
This paper illustrates how kernel P systems (kP systems) can be used for modelling and
validating an engineering application, in this case a cruise control system of an electric bike …

P colonies and kernel P systems

E Csuhaj-Varjú, M Gheorghe, R Lefticaru - International Journal of …, 2018 - Springer
P colonies, tissue-like P systems with very simple components, have received constant
attention from the membrane computing community and in the last years several new …

Spiking Neural P Systems Simulation and Verification

R Lefticaru, M Gheorghe, S Konur, IM Niculescu… - 2021 - bradscholars.brad.ac.uk
Spiking Neural (SN) P systems is a particular class of P systems that abstracts and applies
ideas from neurobiology. Various aspects, representations and features have been studied …

A review of modelling and verification approaches for computational biology

S Konur - 2020 - bradscholars.brad.ac.uk
This paper reviews most frequently used computational modelling approaches and formal
verification techniques in computational biology. The paper also compares a number of …

[PDF][PDF] kPWorkbench: A software

S Konur, LM Mierla, F Ipate, M Gheorghe - 2020 - academia.edu
abstract Membrane computing is a new natural computing paradigm inspired by the
functioning and structure of biological cells, and has been successfully applied to many …

[PDF][PDF] System Modelling, Validation and Testing using Kernel P Systems

M Gheorghe, F Ipate - … FROM 2017 Bucharest, Romania, July 5-8 …, 2017 - academia.edu
Nature inspired computational approaches have been on the focus of researchers for
several decades. Membrane computing [14] is one of these paradigms that has recently …