A comprehensive overview of cotton genomics, biotechnology and molecular biological studies

X Wen, Z Chen, Z Yang, M Wang, S Jin, G Wang… - Science China Life …, 2023 - Springer
Cotton is an irreplaceable economic crop currently domesticated in the human world for its
extremely elongated fiber cells specialized in seed epidermis, which makes it of high …

Recent progression and future perspectives in cotton genomic breeding

Z Yang, C Gao, Y Zhang, Q Yan, W Hu… - Journal of Integrative …, 2023 - Wiley Online Library
Upland cotton is an important global cash crop for its long seed fibers and high edible oil
and protein content. Progress in cotton genomics promotes the advancement of cotton …

Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium

M Wang, J Li, Z Qi, Y Long, L Pei, X Huang… - Nature Genetics, 2022 - nature.com
Phenotypic diversity and evolutionary innovation ultimately trace to variation in genomic
sequence and rewiring of regulatory networks. Here, we constructed a pan-genome of the …

[HTML][HTML] Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton

J You, Z Liu, Z Qi, Y Ma, M Sun, L Su, H Niu, Y Peng… - Nature …, 2023 - nature.com
Polyploidy complicates transcriptional regulation and increases phenotypic diversity in
organisms. The dynamics of genetic regulation of gene expression between coresident …

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

R Peng, Y Xu, S Tian, T Unver, Z Liu… - Proceedings of the …, 2022 - National Acad Sciences
Allotetraploid cotton (Gossypium) species represents a model system for the study of plant
polyploidy, molecular evolution, and domestication. Here, chromosome-scale genome …

[PDF][PDF] Structural variation (SV)-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons

S Jin, Z Han, Y Hu, Z Si, F Dai, L He, Y Cheng, Y Li… - Molecular Plant, 2023 - cell.com
Structural variations (SVs) have long been described as being involved in the origin,
adaption, and domestication of species. However, the underlying genetic and genomic …

[HTML][HTML] Genome-wide association analysis reveals a novel pathway mediated by a dual-TIR domain protein for pathogen resistance in cotton

Y Zhang, Y Zhang, X Ge, Y Yuan, Y Jin, Y Wang… - Genome Biology, 2023 - Springer
Background Verticillium wilt is one of the most devasting diseases for many plants, leading
to global economic loss. Cotton is known to be vulnerable to its fungal pathogen, Verticillium …

[HTML][HTML] High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement

Z Ma, Y Zhang, L Wu, G Zhang, Z Sun, Z Li, Y Jiang… - Nature Genetics, 2021 - nature.com
Cotton produces natural fiber for the textile industry. The genetic effects of genomic structural
variations underlying agronomic traits remain unclear. Here, we generate two high-quality …

CottonMD: a multi-omics database for cotton biological study

Z Yang, J Wang, Y Huang, S Wang, L Wei… - Nucleic Acids …, 2023 - academic.oup.com
Cotton is an important economic crop, and many loci for important traits have been
identified, but it remains challenging and time-consuming to identify candidate or causal …

[HTML][HTML] Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

D Wang, X Hu, H Ye, Y Wang, Q Yang, X Liang… - Genome Biology, 2023 - Springer
Background The epidermis of cotton ovule produces fibers, the most important natural
cellulose source for the global textile industry. However, the molecular mechanism of fiber …