Epigenetics and allergy: from basic mechanisms to clinical applications

DP Potaczek, H Harb, S Michel, BA Alhamwe… - …, 2017 - Future Medicine
Allergic diseases are on the rise in the Western world and well-known allergy-protecting and-
driving factors such as microbial and dietary exposure, pollution and smoking mediate their …

Cell-type deconvolution from DNA methylation: a review of recent applications

AJ Titus, RM Gallimore, LA Salas… - Human molecular …, 2017 - academic.oup.com
Recent advances in cell-type deconvolution approaches are adding to our understanding of
the biology underlying disease development and progression. DNA methylation (DNAm) …

[HTML][HTML] Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling

LA Salas, Z Zhang, DC Koestler, RA Butler… - Nature …, 2022 - nature.com
DNA methylation microarrays can be employed to interrogate cell-type composition in
complex tissues. Here, we expand reference-based deconvolution of blood DNA …

[HTML][HTML] An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray

LA Salas, DC Koestler, RA Butler, HM Hansen… - Genome biology, 2018 - Springer
Genome-wide methylation arrays are powerful tools for assessing cell composition of
complex mixtures. We compare three approaches to select reference libraries for …

Meffil: efficient normalization and analysis of very large DNA methylation datasets

JL Min, G Hemani, G Davey Smith, C Relton… - …, 2018 - academic.oup.com
Motivation DNA methylation datasets are growing ever larger both in sample size and
genome coverage. Novel computational solutions are required to efficiently handle these …

Maternal BMI at the start of pregnancy and offspring epigenome-wide DNA methylation: findings from the pregnancy and childhood epigenetics (PACE) consortium

GC Sharp, LA Salas, C Monnereau… - Human molecular …, 2017 - academic.oup.com
Pre-pregnancy maternal obesity is associated with adverse offspring outcomes at birth and
later in life. Individual studies have shown that epigenetic modifications such as DNA …

[HTML][HTML] Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight

LK Küpers, C Monnereau, GC Sharp, P Yousefi… - Nature …, 2019 - nature.com
Birthweight is associated with health outcomes across the life course, DNA methylation may
be an underlying mechanism. In this meta-analysis of epigenome-wide association studies …

Cell-type deconvolution in epigenome-wide association studies: a review and recommendations

AE Teschendorff, SC Zheng - Epigenomics, 2017 - Future Medicine
A major challenge faced by epigenome-wide association studies (EWAS) is cell-type
heterogeneity. As many EWAS have already demonstrated, adjusting for changes in cell …

Cohort profile: pregnancy and childhood epigenetics (PACE) consortium

JF Felix, BR Joubert, AA Baccarelli… - International journal …, 2018 - academic.oup.com
Epigenetics refers to mitotically heritable changes to the DNA, which do not affect the DNA
sequence, but can influence its function. Currently, DNA methylation is the most studied …

[HTML][HTML] Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

K Gervin, LA Salas, KM Bakulski, MC Van Zelm… - Clinical …, 2019 - Springer
Background Umbilical cord blood (UCB) is commonly used in epigenome-wide association
studies of prenatal exposures. Accounting for cell type composition is critical in such studies …