Cancer as robust intrinsic state of endogenous molecular-cellular network shaped by evolution

P Ao, D Galas, L Hood, X Zhu - Medical hypotheses, 2008 - Elsevier
An endogenous molecular--cellular network for both normal and abnormal functions is
assumed to exist. This endogenous network forms a nonlinear stochastic dynamical system …

[HTML][HTML] Quantifying robustness and dissipation cost of yeast cell cycle network: the funneled energy landscape perspectives

B Han, J Wang - Biophysical journal, 2007 - cell.com
We study the origin of robustness of yeast cell cycle cellular network through uncovering its
underlying energy landscape. This is realized from the information of the steady-state …

Modeling structure-function relationships in synthetic DNA sequences using attribute grammars

Y Cai, MW Lux, L Adam, J Peccoud - PLoS computational biology, 2009 - journals.plos.org
Recognizing that certain biological functions can be associated with specific DNA
sequences has led various fields of biology to adopt the notion of the genetic part. This …

Funneled potential and flux landscapes dictate the stabilities of both the states and the flow: Fission yeast cell cycle

X Luo, L Xu, B Han, J Wang - PLoS computational biology, 2017 - journals.plos.org
Using fission yeast cell cycle as an example, we uncovered that the non-equilibrium network
dynamics and global properties are determined by two essential features: the potential …

Entropy production rate changes in lysogeny/lysis switch regulation of bacteriophage lambda

H Ding, LF Luo, H Lin - Communications in Theoretical Physics, 2011 - iopscience.iop.org
According to the chemical kinetic model of lysogeny/lysis switch in Escherichia coli (E. coli)
infected by bacteriophage λ, the entropy production rates of steady states are calculated …

Electron-impact electronic excitation of molecular nitrogen using the Schwinger multichannel variational method

RF Da Costa, MAP Lima - Physical Review A—Atomic, Molecular, and Optical …, 2007 - APS
The Schwinger multichannel method is applied to study the low-energy electron-impact
excitation of molecular nitrogen. The scattering amplitudes are obtained within the minimal …

[PDF][PDF] Finite state machine and Markovian equivalents of the lac Operon in E. coli bacterium

U Ainuddin, M Waqas - AIMS Bioengineering, 2022 - aimspress.com
The lac operon in E. coli has been extensively studied by computational biologists. The
bacterium uses it to survive in the absence of glucose, utilizing lactose for growth. This paper …

[PDF][PDF] Isolation, characterization and recovery of coliphages from sewage source

VW Lande, VRP Sinha - Journal of Global Biosciences, 2020 - mutagens.co.in
In bacteriophage research, host specific coliphage study was undertaken considering six
aspects.(i) Identification of E. coli strains (E. coli from isolated from sewage source) using …

GenoCAD: linguistic approaches to synthetic biology

Y Cai - 2010 - vtechworks.lib.vt.edu
Synthetic biology is an emerging interdisciplinary research field, which leverages the
maturation of DNA synthesis technologies. By introducing engineering principles to synthetic …

Electron-impact excitation of X Σ g+ 1 (v ″= 0) to the a ″Σ g+ 1, b Π u 1, c 3 Π u 1, o 3 Π u 1, b′ Σ u+ 1, c 4′ Σ u+ 1, G Π u 3, and F Π u 3 states of molecular nitrogen

MA Khakoo, CP Malone, PV Johnson, BR Lewis… - Physical Review A …, 2008 - APS
Measurements of differential cross sections (DCSs) for electron-impact excitation of the a
″Σ g+ 1, b Π u 1, c 3 Π u 1, o 3 Π u 1, b′ Σ u+ 1, c 4′ Σ u+ 1, G Π u 3, and F Π u 3 states in …