Inhibitors of bacterial immune systems: discovery, mechanisms and applications

D Mayo-Muñoz, R Pinilla-Redondo… - Nature Reviews …, 2024 - nature.com
To contend with the diversity and ubiquity of bacteriophages and other mobile genetic
elements, bacteria have developed an arsenal of immune defence mechanisms. Bacterial …

[HTML][HTML] Antibiotic resistance: moving from individual health norms to social norms in one health and global health

S Hernando-Amado, TM Coque, F Baquero… - Frontiers in …, 2020 - frontiersin.org
Antibiotic resistance is a problem for human health, and consequently, its study had been
traditionally focused toward its impact for the success of treating human infections in …

[HTML][HTML] Genomic characterization of nontuberculous mycobacteria

T Fedrizzi, CJ Meehan, A Grottola, E Giacobazzi… - Scientific reports, 2017 - nature.com
Mycobacterium tuberculosis and Mycobacterium leprae have remained, for many years, the
primary species of the genus Mycobacterium of clinical and microbiological interest. The …

[HTML][HTML] Impact of sequencing depth on the characterization of the microbiome and resistome

R Zaheer, N Noyes, R Ortega Polo, SR Cook… - Scientific reports, 2018 - nature.com
Developments in high-throughput next generation sequencing (NGS) technology have
rapidly advanced the understanding of overall microbial ecology as well as occurrence and …

[HTML][HTML] Towards an enhanced understanding of plant–microbiome interactions to improve phytoremediation: engineering the metaorganism

S Thijs, W Sillen, F Rineau, N Weyens… - Frontiers in …, 2016 - frontiersin.org
Phytoremediation is a promising technology to clean-up contaminated soils based on the
synergistic actions of plants and microorganisms. However, to become a widely accepted …

[HTML][HTML] Free-floating extracellular DNA: Systematic profiling of mobile genetic elements and antibiotic resistance from wastewater

D Calderón-Franco, MCM van Loosdrecht, T Abeel… - Water Research, 2021 - Elsevier
The free-floating extracellular DNA (exDNA) fraction of microbial ecosystems harbors
antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs). Natural …

[HTML][HTML] Plasmid classification in an era of whole-genome sequencing: application in studies of antibiotic resistance epidemiology

A Orlek, N Stoesser, MF Anjum, M Doumith… - Frontiers in …, 2017 - frontiersin.org
Plasmids are extra-chromosomal genetic elements ubiquitous in bacteria, and commonly
transmissible between host cells. Their genomes include variable repertoires of 'accessory …

[HTML][HTML] Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'

TE Brewer, KM Handley, P Carini, JA Gilbert… - Nature …, 2016 - nature.com
Although bacteria within the Verrucomicrobia phylum are pervasive in soils around the
world, they are under-represented in both isolate collections and genomic databases. Here …

[HTML][HTML] Typing methods based on whole genome sequencing data

L Uelze, J Grützke, M Borowiak, JA Hammerl… - One Health …, 2020 - Springer
Whole genome sequencing (WGS) of foodborne pathogens has become an effective
method for investigating the information contained in the genome sequence of bacterial …

The microbiome and resistome of chimpanzees, gorillas, and humans across host lifestyle and geography

TP Campbell, X Sun, VH Patel, C Sanz… - The ISME …, 2020 - academic.oup.com
The gut microbiome can vary across differences in host lifestyle, geography, and host
species. By comparing closely related host species across varying lifestyles and geography …