Protein assembly by design

J Zhu, N Avakyan, A Kakkis, AM Hoffnagle… - Chemical …, 2021 - ACS Publications
Proteins are nature's primary building blocks for the construction of sophisticated molecular
machines and dynamic materials, ranging from protein complexes such as photosystem II …

Expanding and reprogramming the genetic code

JW Chin - Nature, 2017 - nature.com
Nature uses a limited, conservative set of amino acids to synthesize proteins. The ability to
genetically encode an expanded set of building blocks with new chemical and physical …

Playing with the molecules of life

DD Young, PG Schultz - ACS chemical biology, 2018 - ACS Publications
Our understanding of the complex molecular processes of living organisms at the molecular
level is growing exponentially. This knowledge, together with a powerful arsenal of tools for …

Expanding the enzyme universe with genetically encoded unnatural amino acids

I Drienovská, G Roelfes - Nature Catalysis, 2020 - nature.com
The emergence of robust methods to expand the genetic code allows incorporation of non-
canonical amino acids into the polypeptide chain of proteins, thus making it possible to …

Recent advances in biocatalysis with chemical modification and expanded amino acid alphabet

AD Pagar, MD Patil, DT Flood, TH Yoo… - Chemical …, 2021 - ACS Publications
The two main strategies for enzyme engineering, directed evolution and rational design,
have found widespread applications in improving the intrinsic activities of proteins. Although …

Current trends in protein engineering: updates and progress

R Sinha, P Shukla - Current Protein and Peptide Science, 2019 - ingentaconnect.com
Proteins are one of the most important and resourceful biomolecules that find applications in
health, industry, medicine, research, and biotechnology. Given its tremendous relevance …

Diverse protein assembly driven by metal and chelating amino acids with selectivity and tunability

M Yang, WJ Song - Nature communications, 2019 - nature.com
Proteins are versatile natural building blocks with highly complex and multifunctional
architectures, and self-assembled protein structures have been created by the introduction …

Metal-responsive regulation of enzyme catalysis using genetically encoded chemical switches

YS Zubi, K Seki, Y Li, AC Hunt, B Liu, B Roux… - Nature …, 2022 - nature.com
Dynamic control over protein function is a central challenge in synthetic biology. To address
this challenge, we describe the development of an integrated computational and …

Designing repeat proteins: a modular approach to protein design

F Parmeggiani, PS Huang - Current Opinion in Structural Biology, 2017 - Elsevier
Highlights•Modular architecture of repeat proteins reduces design complexity.•Idealized self-
compatible units of native families are designed using sequence and structural information …

Atomically accurate design of metalloproteins with predefined coordination geometries

AM Hoffnagle, FA Tezcan - Journal of the American Chemical …, 2023 - ACS Publications
We report a new computational protein design method for the construction of oligomeric
protein assemblies around metal centers with predefined coordination geometries. We apply …