Chemistries for DNA nanotechnology
M Madsen, KV Gothelf - Chemical reviews, 2019 - ACS Publications
The predictable nature of DNA interactions enables the programmable assembly of highly
advanced 2D and 3D DNA structures of nanoscale dimensions. The access to ever larger …
advanced 2D and 3D DNA structures of nanoscale dimensions. The access to ever larger …
Aptamer–Protein Interactions: From Regulation to Biomolecular Detection
C Ji, J Wei, L Zhang, X Hou, J Tan, Q Yuan… - Chemical …, 2023 - ACS Publications
Serving as the basis of cell life, interactions between nucleic acids and proteins play
essential roles in fundamental cellular processes. Aptamers are unique single-stranded …
essential roles in fundamental cellular processes. Aptamers are unique single-stranded …
Rapid and efficient detection of the SARS-CoV-2 spike protein using an electrochemical aptamer-based sensor
The availability of sensors able to rapidly detect SARS-CoV-2 directly in biological fluids in a
single step would allow performing massive diagnostic testing to track in real time and …
single step would allow performing massive diagnostic testing to track in real time and …
Small‐Molecule Quenchers for Förster Resonance Energy Transfer: Structure, Mechanism, and Applications
B Fang, Y Shen, B Peng, H Bai, L Wang… - Angewandte …, 2022 - Wiley Online Library
For fluorogenic probes, Förster resonance energy transfer (FRET) is one of the most widely
used mechanisms to realize the detection of biochemical activities. Dark quenchers relax …
used mechanisms to realize the detection of biochemical activities. Dark quenchers relax …
Duplexed aptamers: history, design, theory, and application to biosensing
Nucleic acid aptamers are single stranded DNA or RNA sequences that specifically bind a
cognate ligand. In addition to their widespread use as stand-alone affinity binding reagents …
cognate ligand. In addition to their widespread use as stand-alone affinity binding reagents …
Comparison of aptamer signaling mechanisms reveals disparities in sensor response and strategies to eliminate false signals
O Alkhamis, J Canoura, C Willis, L Wang… - Journal of the …, 2023 - ACS Publications
Aptamers are nucleic acid-based affinity reagents that have been incorporated into a variety
of molecular sensor formats. However, many aptamer sensors exhibit insufficient sensitivity …
of molecular sensor formats. However, many aptamer sensors exhibit insufficient sensitivity …
IDT SciTools: a suite for analysis and design of nucleic acid oligomers
R Owczarzy, AV Tataurov, Y Wu… - Nucleic acids …, 2008 - academic.oup.com
DNA and RNA oligomers are used in a myriad of diverse biological and biochemical
experiments. These oligonucleotides are designed to have unique biophysical, chemical …
experiments. These oligonucleotides are designed to have unique biophysical, chemical …
Cyanine dyes in biophysical research: the photophysics of polymethine fluorescent dyes in biomolecular environments
The breakthroughs in single molecule spectroscopy of the last decade and the recent
advances in super resolution microscopy have boosted the popularity of cyanine dyes in …
advances in super resolution microscopy have boosted the popularity of cyanine dyes in …
[HTML][HTML] Design of hidden thermodynamic driving for non-equilibrium systems via mismatch elimination during DNA strand displacement
NEC Haley, TE Ouldridge, I Mullor Ruiz… - Nature …, 2020 - nature.com
Recent years have seen great advances in the development of synthetic self-assembling
molecular systems. Designing out-of-equilibrium architectures, however, requires a more …
molecular systems. Designing out-of-equilibrium architectures, however, requires a more …
[HTML][HTML] Programmable energy landscapes for kinetic control of DNA strand displacement
RRF Machinek, TE Ouldridge, NEC Haley… - Nature …, 2014 - nature.com
DNA is used to construct synthetic systems that sense, actuate, move and compute. The
operation of many dynamic DNA devices depends on toehold-mediated strand …
operation of many dynamic DNA devices depends on toehold-mediated strand …