Regulation of ribosomal RNA gene copy number, transcription and nucleolus organization in eukaryotes

Y Hori, C Engel, T Kobayashi - Nature reviews Molecular cell biology, 2023 - nature.com
One of the first biological machineries to be created seems to have been the ribosome.
Since then, organisms have dedicated great efforts to optimize this apparatus. The …

Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae

JL Woolford Jr, SJ Baserga - Genetics, 2013 - academic.oup.com
Ribosomes are highly conserved ribonucleoprotein nanomachines that translate information
in the genome to create the proteome in all cells. In yeast these complex particles contain …

Nutritional control of growth and development in yeast

JR Broach - Genetics, 2012 - academic.oup.com
Availability of key nutrients, such as sugars, amino acids, and nitrogen compounds, dictates
the developmental programs and the growth rates of yeast cells. A number of overlapping …

A targeting modality for destruction of RNA polymerase I that possesses anticancer activity

K Peltonen, L Colis, H Liu, R Trivedi, MS Moubarek… - Cancer cell, 2014 - cell.com
We define the activity and mechanisms of action of a small molecule lead compound for
cancer targeting. We show that the compound, BMH-21, has wide and potent …

The contribution of co-transcriptional RNA: DNA hybrid structures to DNA damage and genome instability

S Hamperl, KA Cimprich - DNA repair, 2014 - Elsevier
Accurate DNA replication and DNA repair are crucial for the maintenance of genome
stability, and it is generally accepted that failure of these processes is a major source of DNA …

Growth control and ribosome biogenesis

H Lempiäinen, D Shore - Current opinion in cell biology, 2009 - Elsevier
Ribosomes provide the basis for protein production and this drives cell growth. Recent
studies, both in yeast and in higher eukaryotes, are beginning to reveal new mechanisms …

RNA polymerase I structure and transcription regulation

C Engel, S Sainsbury, AC Cheung, D Kostrewa… - Nature, 2013 - nature.com
Transcription of ribosomal RNA by RNA polymerase (Pol) I initiates ribosome biogenesis
and regulates eukaryotic cell growth. The crystal structure of Pol I from the yeast …

Basic mechanisms in RNA polymerase I transcription of the ribosomal RNA genes

SJ Goodfellow, JCBM Zomerdijk - Epigenetics: development and disease, 2012 - Springer
Abstract RNA Polymerase (Pol) I produces ribosomal (r) RNA, an essential component of the
cellular protein synthetic machinery that drives cell growth, underlying many fundamental …

ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo

GE Zentner, S Kasinathan, B Xin, R Rohs… - Nature …, 2015 - nature.com
Chromatin endogenous cleavage (ChEC) uses fusion of a protein of interest to micrococcal
nuclease (MNase) to target calcium-dependent cleavage to specific genomic loci in vivo …

Long-range single-molecule mapping of chromatin accessibility in eukaryotes

Z Shipony, GK Marinov, MP Swaffer… - Nature …, 2020 - nature.com
Mapping open chromatin regions has emerged as a widely used tool for identifying active
regulatory elements in eukaryotes. However, existing approaches, limited by reliance on …