Nucleases: diversity of structure, function and mechanism

W Yang - Quarterly reviews of biophysics, 2011 - cambridge.org
Nucleases cleave the phosphodiester bonds of nucleic acids and may be endo or exo,
DNase or RNase, topoisomerases, recombinases, ribozymes, or RNA splicing enzymes. In …

[HTML][HTML] Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification

BL Stoddard - Structure, 2011 - cell.com
Homing endonucleases are microbial DNA-cleaving enzymes that mobilize their own
reading frames by generating double strand breaks at specific genomic invasion sites …

[HTML][HTML] A synthetic sex ratio distortion system for the control of the human malaria mosquito

R Galizi, LA Doyle, M Menichelli, F Bernardini… - Nature …, 2014 - nature.com
It has been theorized that inducing extreme reproductive sex ratios could be a method to
suppress or eliminate pest populations. Limited knowledge about the genetic makeup and …

[HTML][HTML] Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity

W Yang, JY Lee, M Nowotny - Molecular cell, 2006 - cell.com
DNA and a large proportion of RNA are antiparallel duplexes composed of an unvarying
phosphosugar backbone surrounding uniformly stacked and highly similar base pairs. How …

DNA-binding domains of plant-specific transcription factors: structure, function, and evolution

K Yamasaki, T Kigawa, M Seki, K Shinozaki… - Trends in plant …, 2013 - cell.com
The families of the plant-specific transcription factors (TFs) are defined by their characteristic
DNA-binding domains (DBDs), such as AP2/ERF, B3, NAC, SBP, and WRKY. Recently …

Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility

BS Chevalier, BL Stoddard - Nucleic acids research, 2001 - academic.oup.com
Homing endonucleases confer mobility to their host intervening sequence, either an intron
or intein, by catalyzing a highly specific double-strand break in a cognate allele lacking the …

Tissue-selective effects of nucleolar stress and rDNA damage in developmental disorders

E Calo, B Gu, ME Bowen, F Aryan, A Zalc, J Liang… - Nature, 2018 - nature.com
Many craniofacial disorders are caused by heterozygous mutations in general regulators of
housekeeping cellular functions such as transcription or ribosome biogenesis,. Although it is …

Roles of ATM and NBS1 in chromatin structure modulation and DNA double-strand break repair

E Berkovich, RJ Monnat Jr, MB Kastan - Nature cell biology, 2007 - nature.com
We developed a novel system to create DNA double-strand breaks (DSBs) at defined
endogenous sites in the human genome, and used this system to detect protein recruitment …

3D-DART: a DNA structure modelling server

M van Dijk, AMJJ Bonvin - Nucleic acids research, 2009 - academic.oup.com
There is a growing interest in structural studies of DNA by both experimental and
computational approaches. Often, 3D-structural models of DNA are required, for instance, to …

Meganucleases and DNA double-strand break-induced recombination: perspectives for gene therapy

F Pâques, P Duchateau - Current gene therapy, 2007 - ingentaconnect.com
Meganucleases are sequence-specific endonucleases recognizing large (> 12 bp)
sequence sites and several laboratories have used these proteins to induce highly efficient …