Alternative ORFs and small ORFs: shedding light on the dark proteome
Traditional annotation of protein-encoding genes relied on assumptions, such as one open
reading frame (ORF) encodes one protein and minimal lengths for translated proteins. With …
reading frame (ORF) encodes one protein and minimal lengths for translated proteins. With …
Transposable elements as essential elements in the control of gene expression
A Gebrie - Mobile DNA, 2023 - Springer
Interspersed repetitions called transposable elements (TEs), commonly referred to as mobile
elements, make up a significant portion of the genomes of higher animals. TEs contribute in …
elements, make up a significant portion of the genomes of higher animals. TEs contribute in …
Function and evolution of upstream ORFs in eukaryotes
There is growing interest in the role of translational regulation in cellular homeostasis during
organismal development. Translation initiation is the rate-limiting step in mRNA translation …
organismal development. Translation initiation is the rate-limiting step in mRNA translation …
Principles, mechanisms, and biological implications of translation termination–reinitiation
The gene expression pathway from DNA sequence to functional protein is not as
straightforward as simple depictions of the central dogma might suggest. Each step is highly …
straightforward as simple depictions of the central dogma might suggest. Each step is highly …
Determinants of genome-wide distribution and evolution of uORFs in eukaryotes
Upstream open reading frames (uORFs) play widespread regulatory functions in modulating
mRNA translation in eukaryotes, but the principles underlying the genomic distribution and …
mRNA translation in eukaryotes, but the principles underlying the genomic distribution and …
A novel active transposon creates allelic variation through altered translation rate to influence protein abundance
G Chen, R Wang, Y Jiang, X Dong, J Xu… - Nucleic acids …, 2023 - academic.oup.com
Protein translation is tightly and precisely controlled by multiple mechanisms including
upstream open reading frames (uORFs), but the origins of uORFs and their role in maize are …
upstream open reading frames (uORFs), but the origins of uORFs and their role in maize are …
[PDF][PDF] Transposable Elements Contribute to Genome Dynamics and Gene Expression Variation in the Fungal Plant Pathogen Verticillium dahliae
DE Torres, BPHJ Thomma… - Genome Biology and …, 2021 - academic.oup.com
Transposable elements (TEs) are a major source of genetic and regulatory variation in their
host genome and are consequently thought to play important roles in evolution. Many fungal …
host genome and are consequently thought to play important roles in evolution. Many fungal …
Translational regulation by upstream open reading frames and human diseases
J Silva, R Fernandes, L Romão - The mRNA Metabolism in Human …, 2019 - Springer
Short upstream open reading frames (uORFs) are cis-acting elements located within the 5′-
leader sequence of transcripts and are defined by an initiation codon in-frame with a …
leader sequence of transcripts and are defined by an initiation codon in-frame with a …
Roles of transposable elements in the different layers of gene expression regulation
D Drongitis, F Aniello, L Fucci, A Donizetti - International Journal of …, 2019 - mdpi.com
The biology of transposable elements (TEs) is a fascinating and complex field of
investigation. TEs represent a substantial fraction of many eukaryotic genomes and can …
investigation. TEs represent a substantial fraction of many eukaryotic genomes and can …
Transposable elements, contributors in the evolution of organisms (from an arms race to a source of raw materials)
F Pourrajab, S Hekmatimoghaddam - Heliyon, 2021 - cell.com
There is a concept proposing that the primitive lineages of prokaryotes, eukaryotes, and
viruses emerged from the primordial pool of primitive genetic elements. In this genetic pool …
viruses emerged from the primordial pool of primitive genetic elements. In this genetic pool …