A practical guide to environmental association analysis in landscape genomics
Landscape genomics is an emerging research field that aims to identify the environmental
factors that shape adaptive genetic variation and the gene variants that drive local …
factors that shape adaptive genetic variation and the gene variants that drive local …
Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation
Evolve and resequence (E&R) is a new approach to investigate the genomic responses to
selection during experimental evolution. By using whole genome sequencing of pools of …
selection during experimental evolution. By using whole genome sequencing of pools of …
Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri
MC Fischer, C Rellstab, M Leuzinger, M Roumet… - BMC genomics, 2017 - Springer
Background Microsatellite markers are widely used for estimating genetic diversity within
and differentiation among populations. However, it has rarely been tested whether such …
and differentiation among populations. However, it has rarely been tested whether such …
Signatures of local adaptation in candidate genes of oaks (Quercus spp.) with respect to present and future climatic conditions
Testing how populations are locally adapted and predicting their response to their future
environment is of key importance in view of climate change. Landscape genomics is a …
environment is of key importance in view of climate change. Landscape genomics is a …
Next generation sequencing of pooled samples: guideline for variants' filtering
S Anand, E Mangano, N Barizzone, R Bordoni… - Scientific reports, 2016 - nature.com
Sequencing large number of individuals, which is often needed for population genetics
studies, is still economically challenging despite falling costs of Next Generation …
studies, is still economically challenging despite falling costs of Next Generation …
Genome-wide analysis of ivermectin response by Onchocerca volvulus reveals that genetic drift and soft selective sweeps contribute to loss of drug sensitivity
SR Doyle, C Bourguinat… - PLoS neglected …, 2017 - journals.plos.org
Background Treatment of onchocerciasis using mass ivermectin administration has reduced
morbidity and transmission throughout Africa and Central/South America. Mass drug …
morbidity and transmission throughout Africa and Central/South America. Mass drug …
Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps
Natural genetic variation is essential for the adaptation of organisms to their local
environment and to changing environmental conditions. Here, we examine genomewide …
environment and to changing environmental conditions. Here, we examine genomewide …
Whole‐genome resequencing uncovers molecular signatures of natural and sexual selection in wild bighorn sheep
The identification of genes influencing fitness is central to our understanding of the genetic
basis of adaptation and how it shapes phenotypic variation in wild populations. Here, we …
basis of adaptation and how it shapes phenotypic variation in wild populations. Here, we …
Genomics versus mtDNA for resolving stock structure in the silky shark (Carcharhinus falciformis)
DW Kraft, EE Conklin, EW Barba, M Hutchinson… - PeerJ, 2020 - peerj.com
Conservation genetic approaches for elasmobranchs have focused on regions of the
mitochondrial genome or a handful of nuclear microsatellites. High-throughput sequencing …
mitochondrial genome or a handful of nuclear microsatellites. High-throughput sequencing …
Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus)
Background Adaptive genomics may help predicting how a species will respond to future
environmental changes. Genomic signatures of local adaptation in marine organisms are …
environmental changes. Genomic signatures of local adaptation in marine organisms are …