AI applications to medical images: From machine learning to deep learning

I Castiglioni, L Rundo, M Codari, G Di Leo, C Salvatore… - Physica medica, 2021 - Elsevier
Purpose Artificial intelligence (AI) models are playing an increasing role in biomedical
research and healthcare services. This review focuses on challenges points to be clarified …

MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

JD Tournier, R Smith, D Raffelt, R Tabbara… - Neuroimage, 2019 - Elsevier
MRtrix3 is an open-source, cross-platform software package for medical image processing,
analysis and visualisation, with a particular emphasis on the investigation of the brain using …

[HTML][HTML] Federated learning enables big data for rare cancer boundary detection

S Pati, U Baid, B Edwards, M Sheller, SH Wang… - Nature …, 2022 - nature.com
Although machine learning (ML) has shown promise across disciplines, out-of-sample
generalizability is concerning. This is currently addressed by sharing multi-site data, but …

Contrastive learning of global and local features for medical image segmentation with limited annotations

K Chaitanya, E Erdil, N Karani… - Advances in neural …, 2020 - proceedings.neurips.cc
A key requirement for the success of supervised deep learning is a large labeled dataset-a
condition that is difficult to meet in medical image analysis. Self-supervised learning (SSL) …

[HTML][HTML] The applications of radiomics in precision diagnosis and treatment of oncology: opportunities and challenges

Z Liu, S Wang, D Dong, J Wei, C Fang, X Zhou… - Theranostics, 2019 - ncbi.nlm.nih.gov
Medical imaging can assess the tumor and its environment in their entirety, which makes it
suitable for monitoring the temporal and spatial characteristics of the tumor. Progress in …

fMRIPrep: a robust preprocessing pipeline for functional MRI

O Esteban, CJ Markiewicz, RW Blair, CA Moodie… - Nature …, 2019 - nature.com
Preprocessing of functional magnetic resonance imaging (fMRI) involves numerous steps to
clean and standardize the data before statistical analysis. Generally, researchers create ad …

Convolutional neural networks for classification of Alzheimer's disease: Overview and reproducible evaluation

J Wen, E Thibeau-Sutre, M Diaz-Melo… - Medical image …, 2020 - Elsevier
Numerous machine learning (ML) approaches have been proposed for automatic
classification of Alzheimer's disease (AD) from brain imaging data. In particular, over 30 …

iBEAT V2. 0: a multisite-applicable, deep learning-based pipeline for infant cerebral cortical surface reconstruction

L Wang, Z Wu, L Chen, Y Sun, W Lin, G Li - Nature protocols, 2023 - nature.com
The human cerebral cortex undergoes dramatic and critical development during early
postnatal stages. Benefiting from advances in neuroimaging, many infant brain magnetic …

Deep learning techniques for liver and liver tumor segmentation: A review

S Gul, MS Khan, A Bibi, A Khandakar, MA Ayari… - Computers in Biology …, 2022 - Elsevier
Liver and liver tumor segmentation from 3D volumetric images has been an active research
area in the medical image processing domain for the last few decades. The existence of …

[HTML][HTML] Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan

R Pomponio, G Erus, M Habes, J Doshi, D Srinivasan… - NeuroImage, 2020 - Elsevier
As medical imaging enters its information era and presents rapidly increasing needs for big
data analytics, robust pooling and harmonization of imaging data across diverse cohorts …