Software tools and approaches for compound identification of LC-MS/MS data in metabolomics
The annotation of small molecules remains a major challenge in untargeted mass
spectrometry-based metabolomics. We here critically discuss structured elucidation …
spectrometry-based metabolomics. We here critically discuss structured elucidation …
NORMAN guidance on suspect and non-target screening in environmental monitoring
Increasing production and use of chemicals and awareness of their impact on ecosystems
and humans has led to large interest for broadening the knowledge on the chemical status …
and humans has led to large interest for broadening the knowledge on the chemical status …
The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry
H Mohammed Taha, R Aalizadeh, N Alygizakis… - Environmental Sciences …, 2022 - Springer
Abstract Background The NORMAN Association (https://www. norman-network. com/)
initiated the NORMAN Suspect List Exchange (NORMAN-SLE; https://www. norman …
initiated the NORMAN Suspect List Exchange (NORMAN-SLE; https://www. norman …
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships
F Huber, L Ridder, S Verhoeven… - PLoS computational …, 2021 - journals.plos.org
Spectral similarity is used as a proxy for structural similarity in many tandem mass
spectrometry (MS/MS) based metabolomics analyses such as library matching and …
spectrometry (MS/MS) based metabolomics analyses such as library matching and …
Accelerating metabolite identification in natural product research: toward an ideal combination of liquid chromatography–high-resolution tandem mass spectrometry …
Natural product research aims to characterize specialized metabolites from various living
organisms and assess their biological properties from either a chemical ecology or drug …
organisms and assess their biological properties from either a chemical ecology or drug …
MS2DeepScore: a novel deep learning similarity measure to compare tandem mass spectra
F Huber, S van der Burg, JJJ van der Hooft… - Journal of …, 2021 - Springer
Mass spectrometry data is one of the key sources of information in many workflows in
medicine and across the life sciences. Mass fragmentation spectra are generally considered …
medicine and across the life sciences. Mass fragmentation spectra are generally considered …
Networks and graphs discovery in metabolomics data analysis and interpretation
Both targeted and untargeted mass spectrometry-based metabolomics approaches are used
to understand the metabolic processes taking place in various organisms, from prokaryotes …
to understand the metabolic processes taking place in various organisms, from prokaryotes …
Improving target and suspect screening high-resolution mass spectrometry workflows in environmental analysis by ion mobility separation
Currently, the most powerful approach to monitor organic micropollutants (OMPs) in
environmental samples is the combination of target, suspect, and nontarget screening …
environmental samples is the combination of target, suspect, and nontarget screening …
Empowering large chemical knowledge bases for exposomics: PubChemLite meets MetFrag
EL Schymanski, T Kondić, S Neumann… - Journal of …, 2021 - Springer
Compound (or chemical) databases are an invaluable resource for many scientific
disciplines. Exposomics researchers need to find and identify relevant chemicals that cover …
disciplines. Exposomics researchers need to find and identify relevant chemicals that cover …
[HTML][HTML] Suspect and non-target screening: the last frontier in environmental analysis
B González-Gaya, N Lopez-Herguedas, D Bilbao… - Analytical …, 2021 - pubs.rsc.org
Suspect and non-target screening (SNTS) techniques are arising as new analytical
strategies useful to disentangle the environmental occurrence of the thousands of …
strategies useful to disentangle the environmental occurrence of the thousands of …