Integrative solution structure of PTBP1-IRES complex reveals strong compaction and ordering with residual conformational flexibility
G Dorn, C Gmeiner, T de Vries, E Dedic… - Nature …, 2023 - nature.com
RNA-binding proteins (RBPs) are crucial regulators of gene expression, often composed of
defined domains interspersed with flexible, intrinsically disordered regions. Determining the …
defined domains interspersed with flexible, intrinsically disordered regions. Determining the …
[HTML][HTML] Real-time nuclear magnetic resonance spectroscopy in the study of biomolecular kinetics and dynamics
G Pintér, KF Hohmann, JT Grün… - Magnetic …, 2021 - mr.copernicus.org
The review describes the application of nuclear magnetic resonance (NMR) spectroscopy to
study kinetics of folding, refolding and aggregation of proteins, RNA and DNA. Time …
study kinetics of folding, refolding and aggregation of proteins, RNA and DNA. Time …
Sensitivity enhancement by progressive saturation of the proton reservoir: a solid-state NMR analogue of chemical exchange saturation transfer
MJ Jaroszewicz, AR Altenhof… - Journal of the …, 2021 - ACS Publications
Chemical exchange saturation transfer (CEST) enhances solution-state NMR signals of
labile and otherwise invisible chemical sites, by indirectly detecting their signatures as a …
labile and otherwise invisible chemical sites, by indirectly detecting their signatures as a …
Water irradiation devoid pulses enhance the sensitivity of 1H,1H nuclear Overhauser effects
The nuclear Overhauser effect (NOE) is one of NMR spectroscopy's most important and
versatile parameters. NOE is routinely utilized to determine the structures of medium-to-large …
versatile parameters. NOE is routinely utilized to determine the structures of medium-to-large …
Sensitivity enhancement of homonuclear multidimensional NMR correlations for labile sites in proteins, polysaccharides, and nucleic acids
M Novakovic, Ē Kupče, A Oxenfarth… - Nature …, 2020 - nature.com
Multidimensional TOCSY and NOESY are central experiments in chemical and biophysical
NMR. Limited efficiencies are an intrinsic downside of these methods, particularly when …
NMR. Limited efficiencies are an intrinsic downside of these methods, particularly when …
The incorporation of labile protons into multidimensional NMR analyses: glycan structures revisited
M Novakovic, MD Battistel, HF Azurmendi… - Journal of the …, 2021 - ACS Publications
Glycan structures are often stabilized by a repertoire of hydrogen-bonded donor/acceptor
groups, revealing longer-lived structures that could represent biologically relevant …
groups, revealing longer-lived structures that could represent biologically relevant …
Hyperpolarized water enhances two-dimensional proton NMR correlations: A new approach for molecular interactions
A Sadet, C Stavarache, M Bacalum… - Journal of the …, 2019 - ACS Publications
Protein and peptide interactions are characterized in the liquid state by multidimensional
NMR spectroscopy experiments, which can take hours to record. We show that starting from …
NMR spectroscopy experiments, which can take hours to record. We show that starting from …
A denoising method for multidimensional magnetic resonance spectroscopy and imaging based on compressed sensing
D Koprivica, RP Martinho, M Novakovic… - Journal of Magnetic …, 2022 - Elsevier
Both in spectroscopy and imaging, t 1-noise arising from instabilities such as temperature
alterations, field-related frequency drifts, electronic and sample-spinning instabilities, or …
alterations, field-related frequency drifts, electronic and sample-spinning instabilities, or …
Magnetization transfer to enhance NOE cross‐peaks among labile protons: applications to imino–imino sequential walks in SARS‐CoV‐2‐derived RNAs
M Novakovic, Ē Kupče, T Scherf… - Angewandte …, 2021 - Wiley Online Library
Abstract 2D NOESY plays a central role in structural NMR spectroscopy. We have recently
discussed methods that rely on solvent‐driven exchanges to enhance NOE correlations …
discussed methods that rely on solvent‐driven exchanges to enhance NOE correlations …
Theoretical and computational framework for the analysis of the relaxation properties of arbitrary spin systems. Application to high-resolution relaxometry
N Bolik-Coulon, P Kadeřávek, P Pelupessy… - Journal of Magnetic …, 2020 - Elsevier
A wide variety of nuclear magnetic resonance experiments rely on the prediction and
analysis of relaxation processes. Recently, innovative approaches have been introduced …
analysis of relaxation processes. Recently, innovative approaches have been introduced …