Dancing protein clouds: the strange biology and chaotic physics of intrinsically disordered proteins

VN Uversky - Journal of Biological Chemistry, 2016 - ASBMB
Biologically active but floppy proteins represent a new reality of modern protein science.
These intrinsically disordered proteins (IDPs) and hybrid proteins containing ordered and …

Intrinsically disordered proteins play diverse roles in cell signaling

SE Bondos, AK Dunker, VN Uversky - Cell Communication and Signaling, 2022 - Springer
Signaling pathways allow cells to detect and respond to a wide variety of chemical (eg Ca2+
or chemokine proteins) and physical stimuli (eg, sheer stress, light). Together, these …

Endoplasmic reticulum stress activates SRC, relocating chaperones to the cell surface where GRP78/CD109 blocks TGF-β signaling

YL Tsai, DP Ha, H Zhao, AJ Carlos… - Proceedings of the …, 2018 - National Acad Sciences
The discovery that endoplasmic reticulum (ER) luminal chaperones such as GRP78/BiP can
escape to the cell surface upon ER stress where they regulate cell signaling, proliferation …

Generation of the configurational ensemble of an intrinsically disordered protein from unbiased molecular dynamics simulation

UR Shrestha, P Juneja, Q Zhang… - Proceedings of the …, 2019 - National Acad Sciences
Intrinsically disordered proteins (IDPs) are abundant in eukaryotic proteomes, play a major
role in cell signaling, and are associated with human diseases. To understand IDP function it …

Intrinsically disordered proteins link alternative splicing and post-translational modifications to complex cell signaling and reulation

J Zhou, S Zhao, AK Dunker - Biophysical Journal, 2018 - cell.com
Intrinsically disordered regions (IDRs) make up ca. 30% of the proteome of most eukaryotes,
and are involved in a diverse set of functions. Conventional sequence alignment tools …

Order, disorder, and everything in between

S DeForte, VN Uversky - Molecules, 2016 - mdpi.com
In addition to the “traditional” proteins characterized by the unique crystal-like structures
needed for unique functions, it is increasingly recognized that many proteins or protein …

[HTML][HTML] Computational prediction of MoRFs, short disorder-to-order transitioning protein binding regions

A Katuwawala, Z Peng, J Yang, L Kurgan - Computational and Structural …, 2019 - Elsevier
Molecular recognition features (MoRFs) are short protein-binding regions that undergo
disorder-to-order transitions (induced folding) upon binding protein partners. These regions …

Untapped potential of disordered proteins in current druggable human proteome

G Hu, Z Wu, K Wang, VN Uversky… - Current drug …, 2016 - ingentaconnect.com
Current efforts in design and characterization of drugs often rely on the structure of their
protein targets. However, a large fraction of proteins lack unique 3-D structures and exist as …

Galectin-1 inhibition attenuates profibrotic signaling in hypoxia-induced pulmonary fibrosis

JJ Kathiriya, N Nakra, J Nixon, PS Patel… - Cell death …, 2017 - nature.com
Idiopathic pulmonary fibrosis (IPF) is characterized by lung remodeling arising from
epithelial injury, aberrant fibroblast growth, and excessive deposition of extracellular matrix …

Survey of similarity-based prediction of drug-protein interactions

C Wang, L Kurgan - Current medicinal chemistry, 2020 - ingentaconnect.com
Therapeutic activity of a significant majority of drugs is determined by their interactions with
proteins. Databases of drug-protein interactions (DPIs) primarily focus on the therapeutic …