IoT, big data, and artificial intelligence in agriculture and food industry

NN Misra, Y Dixit, A Al-Mallahi… - IEEE Internet of …, 2020 - ieeexplore.ieee.org
Internet of Things (IoT) results in a massive amount of streaming data, often referred to as
“big data,” which brings new opportunities to monitor agricultural and food processes …

A genomic overview of the population structure of Salmonella

NF Alikhan, Z Zhou, MJ Sergeant, M Achtman - PLoS genetics, 2018 - journals.plos.org
For many decades, Salmonella enterica has been subdivided by serological properties into
serovars or further subdivided for epidemiological tracing by a variety of diagnostic tests with …

[PDF][PDF] Global anaemia reduction efforts among women of reproductive age: impact, achievement of targets and the way forward for optimizing efforts

World Health Organization - 2020 - apps.who.int
Anaemia is a global public health concern, afflicting adolescent girls, women of reproductive
age, pregnant women and children in low-and middle-income countries. 1 Reduction of …

[HTML][HTML] Open-access bacterial population genomics: BIGSdb software, the PubMLST. org website and their applications

KA Jolley, JE Bray, MCJ Maiden - Wellcome open research, 2018 - ncbi.nlm.nih.gov
The PubMLST. org website hosts a collection of open-access, curated databases that
integrate population sequence data with provenance and phenotype information for over …

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

Z Zhou, NF Alikhan, MJ Sergeant, N Luhmann… - Genome …, 2018 - genome.cshlp.org
Current methods struggle to reconstruct and visualize the genomic relationships of large
numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic …

[HTML][HTML] Next-generation sequencing technologies and their application to the study and control of bacterial infections

J Besser, HA Carleton, P Gerner-Smidt… - Clinical microbiology …, 2018 - Elsevier
Background With the efficiency and the decreasing cost of next-generation sequencing, the
technology is being rapidly introduced into clinical and public health laboratory practice …

[HTML][HTML] Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene …

AC Schürch, S Arredondo-Alonso, RJL Willems… - Clinical microbiology …, 2018 - Elsevier
Background Whole genome sequence (WGS)-based strain typing finds increasing use in the
epidemiologic analysis of bacterial pathogens in both public health as well as more …

The use of next generation sequencing for improving food safety: Translation into practice

B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet… - Food …, 2019 - Elsevier
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …

Fast and flexible bacterial genomic epidemiology with PopPUNK

JA Lees, SR Harris, G Tonkin-Hill… - Genome …, 2019 - genome.cshlp.org
The routine use of genomics for disease surveillance provides the opportunity for high-
resolution bacterial epidemiology. Current whole-genome clustering and multilocus typing …

Shiga toxin-associated hemolytic uremic syndrome: A narrative review

A Joseph, A Cointe, P Mariani Kurkdjian, C Rafat… - Toxins, 2020 - mdpi.com
The severity of human infection by one of the many Shiga toxin-producing Escherichia coli
(STEC) is determined by a number of factors: the bacterial genome, the capacity of human …