We describe eMPRess, a software program for phylogenetic tree reconciliation under the
duplication-transfer-loss model that systematically addresses the problems of choosing …

Computational evaluations and benchmarks are widely used for validating graph and
network layout algorithms (aka graph drawing). These evaluations can provide the reader …

A geophylogeny is a phylogenetic tree where each leaf (biological taxon) has an associated
geographic location (site). To clearly visualize a geophylogeny, the tree is typically …

Evaluations—encompassing computational evaluations, benchmarks and user studies—are
essential tools for validating the performance and applicability of graph and network layout …

" Inferring evolutionary relationships among a collection of organisms--that is, their
relationship to each other on the tree of life--remains a central focus of much of evolutionary …

A tanglegram consists of two rooted binary plane trees with the same number of leaves and
a perfect matching between the two leaf sets. Tanglegrams are drawn with the leaves on two …

We consider the problem of drawing multiple gene trees inside a single species tree in order
to visualize multispecies coalescent trees. Specifically, the drawing of the species tree fills a …

Motivation A phylogenetic tree reconciliation is a mapping of one phylogenetic tree onto
another which represents the co-evolution of two sets of taxa (eg parasite–host co-evolution …

In phylogenetics, tree-based networks are used to model and visualize the evolutionary
history of species where reticulate events such as horizontal gene transfer have occurred …

Our goal is to visualize an additional data dimension of a tree with multifaceted data through
superimposition on vertical strips, which we call. Specifically, we extend upward drawings of …