The potential of lactic acid bacteria in mediating the control of plant diseases and plant growth stimulation in crop production-A mini review

NS Jaffar, R Jawan, KP Chong - Frontiers in plant science, 2023 - frontiersin.org
The microbial diseases cause significant damage in agriculture, resulting in major yield and
quality losses. To control microbiological damage and promote plant growth, a number of …

Advances in the genomics and metabolomics of dairy lactobacilli: a review

E Stefanovic, G Fitzgerald, O McAuliffe - Food microbiology, 2017 - Elsevier
The Lactobacillus genus represents the largest and most diverse genera of all the lactic acid
bacteria (LAB), encompassing species with applications in industrial, biotechnological and …

Teasing out missing reactions in genome-scale metabolic networks through hypergraph learning

C Chen, C Liao, YY Liu - Nature Communications, 2023 - nature.com
Abstract GEnome-scale Metabolic models (GEMs) are powerful tools to predict cellular
metabolism and physiological states in living organisms. However, due to our imperfect …

SteadyCom: predicting microbial abundances while ensuring community stability

SHJ Chan, MN Simons… - PLoS computational …, 2017 - journals.plos.org
Genome-scale metabolic modeling has become widespread for analyzing microbial
metabolism. Extending this established paradigm to more complex microbial communities is …

Standardizing biomass reactions and ensuring complete mass balance in genome-scale metabolic models

SHJ Chan, J Cai, L Wang, MN Simons-Senftle… - …, 2017 - academic.oup.com
Motivation In a genome-scale metabolic model, the biomass produced is defined to have a
molecular weight (MW) of 1 g mmol− 1. This is critical for correctly predicting growth yields …

Metabolic network modeling of microbial communities

MB Biggs, GL Medlock, GL Kolling… - … : Systems Biology and …, 2015 - Wiley Online Library
Genome‐scale metabolic network reconstructions and constraint‐based analyses are
powerful methods that have the potential to make functional predictions about microbial …

Omics approaches to assess flavor development in cheese

R Anastasiou, M Kazou, M Georgalaki, A Aktypis… - Foods, 2022 - mdpi.com
Cheese is characterized by a rich and complex microbiota that plays a vital role during both
production and ripening, contributing significantly to the safety, quality, and sensory …

Systematic evaluation of genome-wide metabolic landscapes in lactic acid bacteria reveals diet-and strain-specific probiotic idiosyncrasies

L Koduru, M Lakshmanan, YQ Lee, PL Ho, PY Lim… - Cell Reports, 2022 - cell.com
Lactic acid bacteria (LAB) are well known to elicit health benefits in humans, but their
functional metabolic landscapes remain unexplored. Here, we analyze differences in …

[HTML][HTML] A genome-scale metabolic network of the aroma bacterium Leuconostoc mesenteroides subsp. cremoris

E Özcan, SS Selvi, E Nikerel, B Teusink… - Applied Microbiology …, 2019 - Springer
Leuconostoc mesenteroides subsp. cremoris is an obligate heterolactic fermentative lactic
acid bacterium that is mostly used in industrial dairy fermentations. The phosphoketolase …

A metabolic reconstruction of Lactobacillus reuteri JCM 1112 and analysis of its potential as a cell factory

T Kristjansdottir, EF Bosma, F Branco dos Santos… - Microbial cell …, 2019 - Springer
Background Lactobacillus reuteri is a heterofermentative Lactic Acid Bacterium (LAB) that is
commonly used for food fermentations and probiotic purposes. Due to its robust properties, it …