[HTML][HTML] Gut microbiota–bile acid–skeletal muscle axis

L Mancin, GD Wu, A Paoli - Trends in microbiology, 2023 - cell.com
The gut microbiota represents a 'metabolic organ'that can regulate human metabolism. Intact
gut microbiota contributes to host homeostasis, whereas compositional perturbations …

Roles for intestinal bacteria, viruses, and fungi in pathogenesis of inflammatory bowel diseases and therapeutic approaches

RB Sartor, GD Wu - Gastroenterology, 2017 - Elsevier
Intestinal microbiota are involved in the pathogenesis of Crohn's disease, ulcerative colitis,
and pouchitis. We review the mechanisms by which these gut bacteria, fungi, and viruses …

[HTML][HTML] Characterization of the gut microbiome using 16S or shotgun metagenomics

J Jovel, J Patterson, W Wang, N Hotte… - Frontiers in …, 2016 - frontiersin.org
The advent of next generation sequencing (NGS) has enabled investigations of the gut
microbiome with unprecedented resolution and throughput. This has stimulated the …

Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium

R Sinha, G Abu-Ali, E Vogtmann, AA Fodor… - Nature …, 2017 - nature.com
In order for human microbiome studies to translate into actionable outcomes for health, meta-
analysis of reproducible data from population-scale cohorts is needed. Achieving sufficient …

[HTML][HTML] The human gut microbiota: a key mediator of osteoporosis and osteogenesis

KD Seely, CA Kotelko, H Douglas, B Bealer… - International journal of …, 2021 - mdpi.com
An expanding body of research asserts that the gut microbiota has a role in bone
metabolism and the pathogenesis of osteoporosis. This review considers the human gut …

[HTML][HTML] Interactions between intestinal microbiota and host immune response in inflammatory bowel disease

M Zhang, K Sun, Y Wu, Y Yang, P Tso… - Frontiers in …, 2017 - frontiersin.org
Inflammatory bowel disease (IBD) is a chronic inflammatory disorder of the gastrointestinal
tract. Although the etiology and pathogenesis of IBD remain unclear, both genetic …

Chemotherapy‐driven dysbiosis in the intestinal microbiome

E Montassier, T Gastinne, P Vangay… - Alimentary …, 2015 - Wiley Online Library
Background Chemotherapy is commonly used as myeloablative conditioning treatment to
prepare patients for haematopoietic stem cell transplantation (HSCT). Chemotherapy leads …

[HTML][HTML] Toward accurate and quantitative comparative metagenomics

S Nayfach, KS Pollard - Cell, 2016 - cell.com
Shotgun metagenomics and computational analysis are used to compare the taxonomic and
functional profiles of microbial communities. Leveraging this approach to understand roles of …

Tick microbiome: the force within

S Narasimhan, E Fikrig - Trends in parasitology, 2015 - cell.com
Ticks are obligate blood-feeders and serve as vectors of human and livestock pathogens
worldwide. Defining the tick microbiome and deciphering the interactions between the tick …

[HTML][HTML] Performing skin microbiome research: a method to the madness

HH Kong, B Andersson, T Clavel, JE Common… - Journal of Investigative …, 2017 - Elsevier
Growing interest in microbial contributions to human health and disease has increasingly
led investigators to examine the microbiome in both healthy skin and cutaneous disorders …