Ancient DNA analysis

L Orlando, R Allaby, P Skoglund… - Nature reviews …, 2021 - nature.com
Although the first ancient DNA molecules were extracted more than three decades ago, the
first ancient nuclear genomes could only be characterized after high-throughput sequencing …

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

K Deiner, HM Bik, E Mächler, M Seymour… - Molecular …, 2017 - Wiley Online Library
The genomic revolution has fundamentally changed how we survey biodiversity on earth.
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …

RESCRIPt: Reproducible sequence taxonomy reference database management

MS Robeson, DR O'Rourke, BD Kaehler… - PLoS computational …, 2021 - journals.plos.org
Nucleotide sequence and taxonomy reference databases are critical resources for
widespread applications including marker-gene and metagenome sequencing for …

Late Quaternary dynamics of Arctic biota from ancient environmental genomics

Y Wang, MW Pedersen, IG Alsos, B De Sanctis… - Nature, 2021 - nature.com
During the last glacial–interglacial cycle, Arctic biotas experienced substantial climatic
changes, yet the nature, extent and rate of their responses are not fully understood …

Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

A Valentini, P Taberlet, C Miaud, R Civade… - Molecular …, 2016 - Wiley Online Library
Global biodiversity in freshwater and the oceans is declining at high rates. Reliable tools for
assessing and monitoring aquatic biodiversity, especially for rare and secretive species, are …

Postglacial species arrival and diversity buildup of northern ecosystems took millennia

IG Alsos, DP Rijal, D Ehrich, DN Karger, NG Yoccoz… - Science …, 2022 - science.org
What drives ecosystem buildup, diversity, and stability? We assess species arrival and
ecosystem changes across 16 millennia by combining regional-scale plant sedimentary …

[HTML][HTML] Environmental DNA–An emerging tool in conservation for monitoring past and present biodiversity

PF Thomsen, E Willerslev - Biological conservation, 2015 - Elsevier
The continuous decline in Earth's biodiversity represents a major crisis and challenge for the
21st century, and there is international political agreement to slow down or halt this decline …

The generality of cryptic dietary niche differences in diverse large-herbivore assemblages

J Pansu, MC Hutchinson… - Proceedings of the …, 2022 - National Acad Sciences
Ecological niche differences are necessary for stable species coexistence but are often
difficult to discern. Models of dietary niche differentiation in large mammalian herbivores …

DNA metabarcoding illuminates dietary niche partitioning by African large herbivores

TR Kartzinel, PA Chen, TC Coverdale… - Proceedings of the …, 2015 - National Acad Sciences
Niche partitioning facilitates species coexistence in a world of limited resources, thereby
enriching biodiversity. For decades, biologists have sought to understand how diverse …