Current status and applications of genome-scale metabolic models
Genome-scale metabolic models (GEMs) computationally describe gene-protein-reaction
associations for entire metabolic genes in an organism, and can be simulated to predict …
associations for entire metabolic genes in an organism, and can be simulated to predict …
Multi-omics approaches to disease
High-throughput technologies have revolutionized medical research. The advent of
genotyping arrays enabled large-scale genome-wide association studies and methods for …
genotyping arrays enabled large-scale genome-wide association studies and methods for …
Systems biology and multi-omics integration: viewpoints from the metabolomics research community
The use of multiple omics techniques (ie, genomics, transcriptomics, proteomics, and
metabolomics) is becoming increasingly popular in all facets of life science. Omics …
metabolomics) is becoming increasingly popular in all facets of life science. Omics …
Perspectives and challenges of microbial application for crop improvement
S Timmusk, L Behers, J Muthoni, A Muraya… - Frontiers in plant …, 2017 - frontiersin.org
Global population increases and climate change pose a challenge to worldwide crop
production. There is a need to intensify agricultural production in a sustainable manner and …
production. There is a need to intensify agricultural production in a sustainable manner and …
Light-driven fine chemical production in yeast biohybrids
Inorganic-biological hybrid systems have potential to be sustainable, efficient, and versatile
chemical synthesis platforms by integrating the light-harvesting properties of semiconductors …
chemical synthesis platforms by integrating the light-harvesting properties of semiconductors …
ChEBI in 2016: Improved services and an expanding collection of metabolites
J Hastings, G Owen, A Dekker, M Ennis… - Nucleic acids …, 2016 - academic.oup.com
ChEBI is a database and ontology containing information about chemical entities of
biological interest. It currently includes over 46 000 entries, each of which is classified within …
biological interest. It currently includes over 46 000 entries, each of which is classified within …
Yeast systems biology: model organism and cell factory
J Nielsen - Biotechnology journal, 2019 - Wiley Online Library
For thousands of years, the yeast Saccharomyces cerevisiae (S. cerevisiae) has served as a
cell factory for the production of bread, beer, and wine. In more recent years, this yeast has …
cell factory for the production of bread, beer, and wine. In more recent years, this yeast has …
A community-driven global reconstruction of human metabolism
Multiple models of human metabolism have been reconstructed, but each represents only a
subset of our knowledge. Here we describe Recon 2, a community-driven, consensus' …
subset of our knowledge. Here we describe Recon 2, a community-driven, consensus' …
Single-cell metabolomics: analytical and biological perspectives
R Zenobi - Science, 2013 - science.org
Background In recent years, there has been a surge in the development and application of
single-cell genomics, transcriptomics, proteomics, and metabolomics. The metabolome is …
single-cell genomics, transcriptomics, proteomics, and metabolomics. The metabolome is …
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …
methods and in rational drug design, the increase in approved drugs in the past decade did …