[HTML][HTML] Proteochemometrics–recent developments in bioactivity and selectivity modeling

BJ Bongers, AP IJzerman, GJP Van Westen - Drug Discovery Today …, 2019 - Elsevier
Proteochemometrics is a machine learning based modeling approach relying on a
combination of ligand and protein descriptors. With ongoing developments in machine …

Sequence-based prediction of protein binding regions and drug–target interactions

I Lee, H Nam - Journal of cheminformatics, 2022 - Springer
Identifying drug–target interactions (DTIs) is important for drug discovery. However,
searching all drug–target spaces poses a major bottleneck. Therefore, recently many deep …

Structural insights into the origin of phosphoinositide 3-kinase inhibition

S Hariri, B Rasti, M Mirpour, G Vaghar-Lahijani… - Structural Chemistry, 2020 - Springer
Class I phosphoinositide 3-kinases (PI3Ks) are currently considered as significant targets for
the development of novel pharmaceuticals to treat cancers and inflammatory diseases …

Prediction of viral protease inhibitors using proteochemometrics approach

DA Karasev, BN Sobolev, DA Filimonov… - … Biology and Chemistry, 2024 - Elsevier
Being widely accepted tools in computational drug search, the (Q) SAR methods have
limitations related to data incompleteness. The proteochemometrics (PCM) approach …

3D proteochemometrics: using three-dimensional information of proteins and ligands to address aspects of the selectivity of serine proteases

V Subramanian, QU Ain, H Henno, LO Pietilä… - …, 2017 - pubs.rsc.org
The high similarity between certain sub-pockets of serine proteases may lead to low
selectivity of protease inhibitors. Therefore the application of proteochemometrics (PCM) …

Exploring the origin of phosphodiesterase inhibition via proteochemometric modeling

B Rasti, N Schaduangrat, SS Shahangian… - RSC …, 2017 - pubs.rsc.org
The phosphodiesterase (PDE) superfamily, including all PDE families and subfamilies, are
often implicated in diverse physiological disorders thereby making their selective inhibition …

Probing the origin of dihydrofolate reductase inhibition via proteochemometric modeling

S Hariri, JB Ghasemi, F Shirini… - Journal of …, 2019 - Wiley Online Library
Dihydrofolate reductase (DHFR) is an essential enzyme in the folate metabolism pathway
and an important target of antineoplastic, antimicrobial, antiprotozoal, and antiinflammatory …

Proteochemometric modeling of the interaction space of carbonic anhydrase and its inhibitors: an assessment of structure‐based and sequence‐based descriptors

B Rasti, M Namazi, MH Karimi‐Jafari… - Molecular …, 2017 - Wiley Online Library
Due to its physiological and clinical roles, carbonic anhydrase (CA) is one of the most
interesting case studies. There are different classes of CAinhibitors including sulfonamides …

A novel proteochemometrics model for predicting the inhibition of nine carbonic anhydrase isoforms based on supervised Laplacian score and k-nearest neighbour …

E Nazarshodeh, R Sheikhpour… - SAR and QSAR in …, 2018 - Taylor & Francis
Carbonic anhydrases (CAs) are essential enzymes in biological processes. Prediction of the
activity of compounds towards CA isoforms could be evaluated by computational techniques …

Proteochemometric modeling of the origin of thymidylate synthase inhibition

B Rasti, SS Shahangian - Chemical Biology & Drug Design, 2018 - Wiley Online Library
Due to its crucial role in DNA synthesis, thymidylate synthase (TS) has been considered as a
potential therapeutic target. Inhibition of the enzyme is a promising strategy for the treatment …