Venn diagrams in bioinformatics
A Jia, L Xu, Y Wang - Briefings in bioinformatics, 2021 - academic.oup.com
Venn diagrams are widely used tools for graphical depiction of the unions, intersections and
distinctions among multiple datasets, and a large number of programs have been developed …
distinctions among multiple datasets, and a large number of programs have been developed …
DiVenn: an interactive and integrated web-based visualization tool for comparing gene lists
L Sun, S Dong, Y Ge, JP Fonseca, ZT Robinson… - Frontiers in …, 2019 - frontiersin.org
Gene expression data generated from multiple biological samples (mutant, double mutant,
and wild-type) are often compared via Venn diagram tools. It is of great interest to know the …
and wild-type) are often compared via Venn diagram tools. It is of great interest to know the …
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
Background Set comparisons permeate a large number of data analysis workflows, in
particular workflows in biological sciences. Venn diagrams are frequently employed for such …
particular workflows in biological sciences. Venn diagrams are frequently employed for such …
OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species
Y Wang, D Coleman-Derr, G Chen… - Nucleic acids …, 2015 - academic.oup.com
Genome wide analysis of orthologous clusters is an important component of comparative
genomics studies. Identifying the overlap among orthologous clusters can enable us to …
genomics studies. Identifying the overlap among orthologous clusters can enable us to …
BioVenn–a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
Background In many genomics projects, numerous lists containing biological identifiers are
produced. Often it is useful to see the overlap between different lists, enabling researchers to …
produced. Often it is useful to see the overlap between different lists, enabling researchers to …
Dauer-independent insulin/IGF-1-signalling implicates collagen remodelling in longevity
Interventions that delay ageing mobilize mechanisms that protect and repair cellular
components,,, but it is unknown how these interventions might slow the functional decline of …
components,,, but it is unknown how these interventions might slow the functional decline of …
Regulation of the histone demethylase JMJD1A by hypoxia-inducible factor 1α enhances hypoxic gene expression and tumor growth
AJ Krieg, EB Rankin, D Chan… - … and cellular biology, 2010 - Taylor & Francis
The hypoxia-inducible transcription factors (HIFs) directly and indirectly mediate cellular
adaptation to reduced oxygen tensions. Recent studies have shown that the histone …
adaptation to reduced oxygen tensions. Recent studies have shown that the histone …
The WRKY transcription factor GmWRKY12 confers drought and salt tolerance in soybean
WY Shi, YT Du, J Ma, DH Min, LG Jin, J Chen… - International Journal of …, 2018 - mdpi.com
WRKYs are important regulators in plant development and stress responses. However,
knowledge of this superfamily in soybean is limited. In this study, we characterized the …
knowledge of this superfamily in soybean is limited. In this study, we characterized the …
Dynamic changes to lipid mediators support transitions among macrophage subtypes during muscle regeneration
Muscle damage elicits a sterile immune response that facilitates complete regeneration.
Here, we used mass spectrometry–based lipidomics to map the mediator lipidome during …
Here, we used mass spectrometry–based lipidomics to map the mediator lipidome during …
Elevated MMP9 expression in breast cancer is a predictor of shorter patient survival
Purpose MMP9 is a matricellular protein associated with extracellular matrix (ECM)
remodelling, that promotes tumour progression, and modulates the activity of cell adhesion …
remodelling, that promotes tumour progression, and modulates the activity of cell adhesion …