[HTML][HTML] Advances in constraint-based modelling of microbial communities
Microbial communities are near universally present in nature. A wealth of meta-omics data
has been gathered from numerous ecosystems, such as the human gut, ocean or soil …
has been gathered from numerous ecosystems, such as the human gut, ocean or soil …
Metagenomics and metabolomics approaches in the study of Candida albicans colonization of host niches: a framework for finding microbiome-based antifungal …
M Delavy, N Sertour, C d'Enfert, ME Bougnoux - Trends in Microbiology, 2023 - cell.com
In silico and experimental approaches have allowed an ever-growing understanding of the
interactions within the microbiota. For instance, recently acquired data have increased …
interactions within the microbiota. For instance, recently acquired data have increased …
Microbiome and metabolome features in inflammatory bowel disease via multi-omics integration analyses across cohorts
L Ning, YL Zhou, H Sun, Y Zhang, C Shen… - Nature …, 2023 - nature.com
The perturbations of the gut microbiota and metabolites are closely associated with the
progression of inflammatory bowel disease (IBD). However, inconsistent findings across …
progression of inflammatory bowel disease (IBD). However, inconsistent findings across …
Lactobacillus rhamnosus colonisation antagonizes Candida albicans by forcing metabolic adaptations that compromise pathogenicity
R Alonso-Roman, A Last, MH Mirhakkak… - Nature …, 2022 - nature.com
Intestinal microbiota dysbiosis can initiate overgrowth of commensal Candida species–a
major predisposing factor for disseminated candidiasis. Commensal bacteria such as …
major predisposing factor for disseminated candidiasis. Commensal bacteria such as …
Genome-scale metabolic modeling of Aspergillus fumigatus strains reveals growth dependencies on the lung microbiome
Aspergillus fumigatus, an opportunistic human pathogen, frequently infects the lungs of
people with cystic fibrosis and is one of the most common causes of infectious-disease …
people with cystic fibrosis and is one of the most common causes of infectious-disease …
Candida expansion in the gut of lung cancer patients associates with an ecological signature that supports growth under dysbiotic conditions
Candida species overgrowth in the human gut is considered a prerequisite for invasive
candidiasis, but our understanding of gut bacteria promoting or restricting this overgrowth is …
candidiasis, but our understanding of gut bacteria promoting or restricting this overgrowth is …
The interplay between gut bacteria and the yeast Candida albicans
JC Pérez - Gut Microbes, 2021 - Taylor & Francis
The fungus Candida albicans is a ubiquitous member of the human gut microbiota.
Hundreds or thousands of bacterial taxa reside together with this fungus in the intestine …
Hundreds or thousands of bacterial taxa reside together with this fungus in the intestine …
Characterization of antifungal cyclic dipeptides of Lacticaseibacillus paracasei ZX1231 and active packaging film prepared with its cell-free supernatant and bacterial …
X Zheng, W Nie, J Xu, H Zhang, X Liang… - Food Research …, 2022 - Elsevier
Fungal infection and/or spoilage are major concerns of crop and food security worldwide,
prompting the developments and application of various antimicrobial agents. In this study …
prompting the developments and application of various antimicrobial agents. In this study …
Metabolic dissimilarity determines the establishment of cross-feeding interactions in bacteria
The exchange of metabolites among different bacterial genotypes profoundly impacts the
structure and function of microbial communities. However, the factors governing the …
structure and function of microbial communities. However, the factors governing the …
A clinical study provides the first direct evidence that interindividual variations in fecal β-lactamase activity affect the gut mycobiota dynamics in response to β-lactam …
M Delavy, C Burdet, N Sertour, S Devente, JD Docquier… - MBio, 2022 - Am Soc Microbiol
Antibiotics disturb the intestinal bacterial microbiota, leading to gut dysbiosis and an
increased risk for the overgrowth of opportunistic pathogens. It is not fully understood to what …
increased risk for the overgrowth of opportunistic pathogens. It is not fully understood to what …