Adaptive mechanisms of plant specialized metabolism connecting chemistry to function

JK Weng, JH Lynch, JO Matos, N Dudareva - Nature Chemical Biology, 2021 - nature.com
As sessile organisms, plants evolved elaborate metabolic systems that produce a plethora of
specialized metabolites as a means to survive challenging terrestrial environments …

Evolutionary pathways and trajectories in antibiotic resistance

F Baquero, JL Martinez, V F. Lanza… - Clinical Microbiology …, 2021 - Am Soc Microbiol
Evolution is the hallmark of life. Descriptions of the evolution of microorganisms have
provided a wealth of information, but knowledge regarding “what happened” has precluded …

[HTML][HTML] Automated model-predictive design of synthetic promoters to control transcriptional profiles in bacteria

TL LaFleur, A Hossain, HM Salis - Nature communications, 2022 - nature.com
Transcription rates are regulated by the interactions between RNA polymerase, sigma factor,
and promoter DNA sequences in bacteria. However, it remains unclear how non-canonical …

[HTML][HTML] Controlling gene expression with deep generative design of regulatory DNA

J Zrimec, X Fu, AS Muhammad, C Skrekas… - Nature …, 2022 - nature.com
Abstract Design of de novo synthetic regulatory DNA is a promising avenue to control gene
expression in biotechnology and medicine. Using mutagenesis typically requires screening …

Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

CG de Boer, ED Vaishnav, R Sadeh, EL Abeyta… - Nature …, 2020 - nature.com
How transcription factors (TFs) interpret cis-regulatory DNA sequence to control gene
expression remains unclear, largely because past studies using native and engineered …

Redefining fundamental concepts of transcription initiation in bacteria

C Mejía-Almonte, SJW Busby, JT Wade… - Nature Reviews …, 2020 - nature.com
Despite enormous progress in understanding the fundamentals of bacterial gene regulation,
our knowledge remains limited when compared with the number of bacterial genomes and …

[HTML][HTML] Central dogma rates and the trade-off between precision and economy in gene expression

J Hausser, A Mayo, L Keren, U Alon - Nature communications, 2019 - nature.com
Steady-state protein abundance is set by four rates: transcription, translation, mRNA decay
and protein decay. A given protein abundance can be obtained from infinitely many …

Regulatory activity is the default DNA state in eukaryotes

I Luthra, C Jensen, XE Chen, AL Salaudeen… - Nature Structural & …, 2024 - nature.com
Genomes encode for genes and non-coding DNA, both capable of transcriptional activity.
However, unlike canonical genes, many transcripts from non-coding DNA have limited …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

Advances in promoter engineering: novel applications and predefined transcriptional control

AP Cazier, J Blazeck - Biotechnology Journal, 2021 - Wiley Online Library
Synthetic biology continues to progress by relying on more robust tools for transcriptional
control, of which promoters are the most fundamental component. Numerous studies have …