Prediction and estimation of effective population size

J Wang, E Santiago, A Caballero - Heredity, 2016 - nature.com
Effective population size (N e) is a key parameter in population genetics. It has important
applications in evolutionary biology, conservation genetics and plant and animal breeding …

Genomics and the future of conservation genetics

FW Allendorf, PA Hohenlohe, G Luikart - Nature reviews genetics, 2010 - nature.com
We will soon have complete genome sequences from thousands of species, as well as from
many individuals within species. This coming explosion of information will transform our …

Evolution of immune genes is associated with the Black Death

J Klunk, TP Vilgalys, CE Demeure, X Cheng… - Nature, 2022 - nature.com
Infectious diseases are among the strongest selective pressures driving human evolution,.
This includes the single greatest mortality event in recorded history, the first outbreak of the …

Clonal fitness inferred from time-series modelling of single-cell cancer genomes

S Salehi, F Kabeer, N Ceglia, M Andronescu… - Nature, 2021 - nature.com
Progress in defining genomic fitness landscapes in cancer, especially those defined by copy
number alterations (CNAs), has been impeded by lack of time-series single-cell sampling of …

Natural history collections as windows on evolutionary processes

MW Holmes, TT Hammond, GOU Wogan… - Molecular …, 2016 - Wiley Online Library
Natural history collections provide an immense record of biodiversity on Earth. These
repositories have traditionally been used to address fundamental questions in …

Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches

G Luikart, N Ryman, DA Tallmon, MK Schwartz… - Conservation …, 2010 - Springer
Population census size (NC) and effective population sizes (N e) are two crucial parameters
that influence population viability, wildlife management decisions, and conservation …

Coat color variation at the beginning of horse domestication

A Ludwig, M Pruvost, M Reissmann, N Benecke… - Science, 2009 - science.org
The transformation of wild animals into domestic ones available for human nutrition was a
key prerequisite for modern human societies. However, no other domestic species has had …

Correlational selection in the age of genomics

EI Svensson, SJ Arnold, R Bürger, K Csilléry… - Nature ecology & …, 2021 - nature.com
Ecologists and evolutionary biologists are well aware that natural and sexual selection do
not operate on traits in isolation, but instead act on combinations of traits. This long …

High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast

AN Nguyen Ba, I Cvijović, JI Rojas Echenique… - Nature, 2019 - nature.com
In rapidly adapting asexual populations, including many microbial pathogens and viruses,
numerous mutant lineages often compete for dominance within the population,,,–. These …

An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data

AJ Stern, PR Wilton, R Nielsen - PLoS Genetics, 2019 - journals.plos.org
Most current methods for detecting natural selection from DNA sequence data are limited in
that they are either based on summary statistics or a composite likelihood, and as a …