Diversification, adaptation, and community assembly of the American oaks (Quercus), a model clade for integrating ecology and evolution

J Cavender‐Bares - New Phytologist, 2019 - Wiley Online Library
Contents Summary 669 I. Model clades for the study and integration of ecology and
evolution 670 II. Oaks: an important model clade 671 III. Insights from the history of the …

Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches

EA Zimmer, J Wen - Journal of Systematics and Evolution, 2015 - Wiley Online Library
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …

[HTML][HTML] Oak genome reveals facets of long lifespan

C Plomion, JM Aury, J Amselem, T Leroy, F Murat… - Nature plants, 2018 - nature.com
Oaks are an important part of our natural and cultural heritage. Not only are they ubiquitous
in our most common landscapes but they have also supplied human societies with …

Signatures of local adaptation in candidate genes of oaks (Quercus spp.) with respect to present and future climatic conditions

C Rellstab, S Zoller, L Walthert, I Lesur… - Molecular …, 2016 - Wiley Online Library
Testing how populations are locally adapted and predicting their response to their future
environment is of key importance in view of climate change. Landscape genomics is a …

Landscape genomics of Quercus lobata reveals genes involved in local climate adaptation at multiple spatial scales

PF Gugger, ST Fitz‐Gibbon, A Albarrán‐Lara… - Molecular …, 2021 - Wiley Online Library
Understanding how the environment shapes genetic variation provides critical insight about
the evolution of local adaptation in natural populations. At multiple spatial scales and …

First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae)

VL Sork, ST Fitz-Gibbon, D Puiu… - G3: Genes …, 2016 - academic.oup.com
Oak represents a valuable natural resource across Northern Hemisphere ecosystems,
attracting a large research community studying its genetics, ecology, conservation, and …

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

C Plomion, JM Aury, J Amselem… - Molecular ecology …, 2016 - Wiley Online Library
Abstract The 1.5 Gbp/2C genome of pedunculate oak (Quercus robur) has been sequenced.
A strategy was established for dealing with the challenges imposed by the sequencing of …

[HTML][HTML] Current status and trends in forest genomics

D Borthakur, V Busov, XH Cao, Q Du, O Gailing… - Forestry …, 2022 - maxapress.com
Forests are not only the most predominant of the Earth's terrestrial ecosystems, but are also
the core supply for essential products for human use. However, global climate change and …

[HTML][HTML] From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy

N Vimont, M Fouché, JA Campoy, M Tong, M Arkoun… - BMC genomics, 2019 - Springer
Background Bud dormancy is a crucial stage in perennial trees and allows survival over
winter to ensure optimal flowering and fruit production. Recent work highlighted …

Extensive recent secondary contacts between four European white oak species

T Leroy, C Roux, L Villate, C Bodénès… - New …, 2017 - Wiley Online Library
Historical trajectories of tree species during the late Quaternary have been well
reconstructed through genetic and palaeobotanical studies. However, many congeneric tree …