Microbial degradation of aromatic compounds—from one strategy to four

G Fuchs, M Boll, J Heider - Nature Reviews Microbiology, 2011 - nature.com
Aromatic compounds are both common growth substrates for microorganisms and
prominent environmental pollutants. The crucial step in their degradation is overcoming the …

[PDF][PDF] Dynamic allostery: linkers are not merely flexible

B Ma, CJ Tsai, T Haliloğlu, R Nussinov - Structure, 2011 - cell.com
Most proteins consist of multiple domains. How do linkers efficiently transfer information
between sites that are on different domains to activate the protein? Mere flexibility only …

Bacterial degradation of benzoate: cross-regulation between aerobic and anaerobic pathways

JA Valderrama, G Durante-Rodríguez… - Journal of Biological …, 2012 - ASBMB
We have studied for the first time the transcriptional regulatory circuit that controls the
expression of the box genes encoding the aerobic hybrid pathway used to assimilate …

Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features

Z Martín-Moldes, MT Zamarro, C Del Cerro… - Systematic and applied …, 2015 - Elsevier
The genomic features of Azoarcus sp. CIB reflect its most distinguishing phenotypes as a
diazotroph, facultative anaerobe, capable of degrading either aerobically and/or …

Structural and functional analysis of the Rpf2-Rrs1 complex in ribosome biogenesis

N Asano, K Kato, A Nakamura, K Komoda… - Nucleic acids …, 2015 - academic.oup.com
Abstract Proteins Rpf2 and Rrs1 are required for 60S ribosomal subunit maturation. These
proteins are necessary for the recruitment of three ribosomal components (5S ribosomal …

[HTML][HTML] Comparative genomic analysis of the regulation of aromatic metabolism in betaproteobacteria

IA Suvorova, MS Gelfand - Frontiers in Microbiology, 2019 - frontiersin.org
Aromatic compounds are a common carbon and energy source for many microorganisms,
some of which can even degrade toxic chloroaromatic xenobiotics. This comparative study …

Towards habitat-oriented systems biology of “Aromatoleum aromaticum” EbN1: Chemical sensing, catabolic network modulation and growth control in anaerobic …

R Rabus, K Trautwein, L Wöhlbrand - Applied microbiology and …, 2014 - Springer
The denitrifying betaproteobacterium “Aromatoleum aromaticum” EbN1 is a well-studied
model organism for anaerobic degradation of aromatic compounds. Following publication of …

Complex and flexible catabolism in Aromatoleum aromaticum pCyN1

P Becker, A Döhmann, L Wöhlbrand… - Environmental …, 2022 - Wiley Online Library
Large quantities of organic matter are continuously deposited, and (a) biotic gradients
intersect in the soil–rhizosphere, where biodegradation contributes to the global cycles of …

Characterization of the mbd cluster encoding the anaerobic 3‐methylbenzoyl‐CoA central pathway

JF Juárez, MT Zamarro, C Eberlein… - Environmental …, 2013 - Wiley Online Library
The mbd cluster encoding genes of the 3‐methylbenzoyl‐CoA pathway involved in the
anaerobic catabolism of 3‐methylbenzoate and m‐xylene was characterized for the first time …

A quorum-sensing regulatory cascade for siderophore-mediated iron homeostasis in Chromobacterium violaceum

BB Batista, VM de Lima, BA Picinato, T Koide… - Msystems, 2024 - Am Soc Microbiol
Iron is a transition metal used as a cofactor in many biochemical reactions. In bacteria, iron
homeostasis involves Fur-mediated de-repression of iron uptake systems, such as the iron …