[HTML][HTML] Single cell RNA sequencing of rare immune cell populations

A Nguyen, WH Khoo, I Moran, PI Croucher… - Frontiers in …, 2018 - frontiersin.org
Single-cell RNA sequencing (scRNA-Seq) is transforming our ability to characterize cells,
particularly rare cells that are often overlooked in bulk population analytical approaches …

[HTML][HTML] Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods

J Costa-Silva, DS Domingues, D Menotti… - Computational and …, 2023 - Elsevier
Abstract Analysis of differential gene expression from RNA-seq data has become a standard
for several research areas. The steps for the computational analysis include many data …

[HTML][HTML] Systematic comparison and assessment of RNA-seq procedures for gene expression quantitative analysis

LA Corchete, EA Rojas, D Alonso-López… - Scientific reports, 2020 - nature.com
RNA-seq is currently considered the most powerful, robust and adaptable technique for
measuring gene expression and transcription activation at genome-wide level. As the …

[HTML][HTML] Supplementation with small-extracellular vesicles from ovarian follicular fluid during in vitro production modulates bovine embryo development

JC da Silveira, GM Andrade, M Del Collado… - PloS one, 2017 - journals.plos.org
Pregnancy success results from the interaction of multiple factors, among them are
folliculogenesis and early embryonic development. Failure during these different processes …

[HTML][HTML] Probing into the effects of grapevine leafroll-associated viruses on the physiology, fruit quality and gene expression of grapes

Y Song, RH Hanner, B Meng - Viruses, 2021 - mdpi.com
Grapevine leafroll is one of the most widespread and highly destructive grapevine diseases
that is responsible for great economic losses to the grape and wine industries throughout the …

Dual RNA‐sequencing analyses of a coral and its native symbiont during the establishment of symbiosis

AR Mohamed, N Andrade, A Moya, CX Chan… - Molecular …, 2020 - Wiley Online Library
Despite the ecological significance of the mutualistic relationship between Symbiodiniaceae
and reef‐building corals, the molecular interactions during establishment of this relationship …

Integrated COVID-19 Predictor: Differential expression analysis to reveal potential biomarkers and prediction of coronavirus using RNA-Seq profile data

N Iqbal, P Kumar - Computers in Biology and Medicine, 2022 - Elsevier
Background The world has been battling the continuous COVID-19 pandemic spread by the
SARS-CoV-2 virus for last two years. The issue of viral disease prediction is constantly a …

Characterization and demonstration of mock communities as control reagents for accurate human microbiome community measurements

DM Tourlousse, K Narita, T Miura, A Ohashi… - Microbiology …, 2022 - Am Soc Microbiol
Standardization and quality assurance of microbiome community analysis by high-
throughput DNA sequencing require widely accessible and well-characterized reference …

Genetic Underpinnings of Host Manipulation by Ophiocordyceps as Revealed by Comparative Transcriptomics

I Will, B Das, T Trinh, A Brachmann… - G3: Genes …, 2020 - academic.oup.com
Ant-infecting Ophiocordyceps fungi are globally distributed, host manipulating, specialist
parasites that drive aberrant behaviors in infected ants, at a lethal cost to the host. An …

[HTML][HTML] Two's company: studying interspecies relationships with dual RNA-seq

T Wolf, P Kämmer, S Brunke, J Linde - Current opinion in microbiology, 2018 - Elsevier
Organisms do not exist isolated from each other, but constantly interact. Cells can sense the
presence of interaction partners by a range of receptors and, via complex regulatory …