The life and times of a tRNA

EM Phizicky, AK Hopper - RNA, 2023 - rnajournal.cshlp.org
The study of eukaryotic tRNA processing has given rise to an explosion of new information
and insights in the last several years. We now have unprecedented knowledge of each step …

tRNA introns: presence, processing, and purpose

CA Schmidt, AG Matera - Wiley Interdisciplinary Reviews: RNA, 2020 - Wiley Online Library
The presence of introns in both protein‐coding and noncoding RNA transcripts is a
fascinating phenomenon. It seems counterintuitive that an organism would devote precious …

Molecular determinants of metazoan tricRNA biogenesis

CA Schmidt, JD Giusto, A Bao, AK Hopper… - Nucleic acids …, 2019 - academic.oup.com
Mature tRNAs are generated by multiple post-transcriptional processing steps, which can
include intron removal. Recently, we discovered a new class of circular non-coding RNAs in …

Reconstitution of the human tRNA splicing endonuclease complex: insight into the regulation of pre-tRNA cleavage

CK Hayne, CA Schmidt, MI Haque… - Nucleic acids …, 2020 - academic.oup.com
The splicing of tRNA introns is a critical step in pre-tRNA maturation. In archaea and
eukaryotes, tRNA intron removal is catalyzed by the tRNA splicing endonuclease (TSEN) …

Recent insights into the structure, function, and regulation of the eukaryotic transfer RNA splicing endonuclease complex

CK Hayne, TA Lewis, RE Stanley - Wiley Interdisciplinary …, 2022 - Wiley Online Library
The splicing of transfer RNA (tRNA) introns is a critical step of tRNA maturation, for intron‐
containing tRNAs. In eukaryotes, tRNA splicing is a multi‐step process that relies on several …

Comparative parallel analysis of RNA ends identifies mRNA substrates of a tRNA splicing endonuclease-initiated mRNA decay pathway

JE Hurtig, MA Steiger, VK Nagarajan… - Proceedings of the …, 2021 - National Acad Sciences
Eukaryotes share a conserved messenger RNA (mRNA) decay pathway in which bulk
mRNA is degraded by exoribonucleases. In addition, it has become clear that more …

No-Go Decay mRNA cleavage in the ribosome exit tunnel produces 5′-OH ends phosphorylated by Trl1

A Navickas, S Chamois, R Saint-Fort, J Henri… - Nature …, 2020 - nature.com
Abstract The No-Go Decay (NGD) mRNA surveillance pathway degrades mRNAs containing
stacks of stalled ribosomes. Although an endoribonuclease has been proposed to initiate …

Mutations in the anticodon stem of tRNA cause accumulation and Met22-dependent decay of pre-tRNA in yeast

MJ Payea, AC Hauke, T De Zoysa, EM Phizicky - Rna, 2020 - rnajournal.cshlp.org
During tRNA maturation in yeast, aberrant pre-tRNAs are targeted for 3′–5′ degradation
by the nuclear surveillance pathway, and aberrant mature tRNAs are targeted for 5′–3 …

Intron lariat spliceosomes convert lariats to true circles: implications for intron transposition

M Ares, H Igel, S Katzman… - Genes & Development, 2024 - genesdev.cshlp.org
Rare, full-length circular intron RNAs distinct from lariats have been reported in several
species, but their biogenesis is not understood. We envisioned and tested a hypothesis for …

Yeast Dxo1 is required for 25S rRNA maturation and acts as a transcriptome-wide distributive exonuclease

JE Hurtig, A van Hoof - RNA, 2022 - rnajournal.cshlp.org
The Dxo1/Rai1/DXO family of decapping and exonuclease enzymes can catalyze the in vitro
removal of chemically diverse 5′ ends from RNA. Specifically, these enzymes act poorly on …