Genetic drift, selection and the evolution of the mutation rate

M Lynch, MS Ackerman, JF Gout, H Long… - Nature Reviews …, 2016 - nature.com
As one of the few cellular traits that can be quantified across the tree of life, DNA-replication
fidelity provides an excellent platform for understanding fundamental evolutionary …

Transcription-replication encounters, consequences and genomic instability

A Helmrich, M Ballarino, E Nudler, L Tora - Nature structural & …, 2013 - nature.com
To ensure accurate duplication of genetic material, the replication fork must overcome
numerous natural obstacles on its way, including transcription complexes engaged along …

[HTML][HTML] Linking RNA polymerase backtracking to genome instability in E. coli

D Dutta, K Shatalin, V Epshtein, ME Gottesman… - Cell, 2011 - cell.com
Frequent codirectional collisions between the replisome and RNA polymerase (RNAP) are
inevitable because the rate of replication is much faster than that of transcription. Here we …

Transcription as a source of genome instability

N Kim, S Jinks-Robertson - Nature Reviews Genetics, 2012 - nature.com
Alterations in genome sequence and structure contribute to somatic disease, affect the
fitness of subsequent generations and drive evolutionary processes. The crucial roles of …

The organization of the bacterial genome

EPC Rocha - Annual review of genetics, 2008 - annualreviews.org
Many bacterial cellular processes interact intimately with the chromosome. Such interplay is
the major driving force of genome structure or organization. Interactions take place at …

Replication–transcription conflicts in bacteria

H Merrikh, Y Zhang, AD Grossman… - Nature Reviews …, 2012 - nature.com
DNA replication and transcription use the same template and occur concurrently in bacteria.
The lack of temporal and spatial separation of these two processes leads to their conflict …

The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo

H Boubakri, AL De Septenville, E Viguera… - The EMBO …, 2010 - embopress.org
How living cells deal with head‐on collisions of the replication and transcription complexes
has been debated for a long time. Even in the widely studied model bacteria Escherichia …

[HTML][HTML] Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription

R Bermejo, MS Lai, M Foiani - Molecular cell, 2012 - cell.com
DNA and RNA polymerases clash along the genome as they compete for the same DNA
template. Cells have evolved specialized strategies to prevent and resolve replication and …

The bacterial cell cycle, chromosome inheritance and cell growth

R Reyes-Lamothe, DJ Sherratt - Nature Reviews Microbiology, 2019 - nature.com
All viable bacterial cells, whether they divide symmetrically or asymmetrically, must
coordinate their growth, division, cell volume and shape with the inheritance of the genome …

[HTML][HTML] Co-orientation of replication and transcription preserves genome integrity

A Srivatsan, A Tehranchi, DM MacAlpine… - PLoS genetics, 2010 - journals.plos.org
In many bacteria, there is a genome-wide bias towards co-orientation of replication and
transcription, with essential and/or highly-expressed genes further enriched co-directionally …