[HTML][HTML] Deep learning for low-data drug discovery: hurdles and opportunities
Deep learning is becoming increasingly relevant in drug discovery, from de novo design to
protein structure prediction and synthesis planning. However, it is often challenged by the …
protein structure prediction and synthesis planning. However, it is often challenged by the …
Exposing the limitations of molecular machine learning with activity cliffs
D Van Tilborg, A Alenicheva… - Journal of chemical …, 2022 - ACS Publications
Machine learning has become a crucial tool in drug discovery and chemistry at large, eg, to
predict molecular properties, such as bioactivity, with high accuracy. However, activity …
predict molecular properties, such as bioactivity, with high accuracy. However, activity …
Effect of dataset size and train/test split ratios in QSAR/QSPR multiclass classification
Applied datasets can vary from a few hundred to thousands of samples in typical quantitative
structure-activity/property (QSAR/QSPR) relationships and classification. However, the size …
structure-activity/property (QSAR/QSPR) relationships and classification. However, the size …
Understanding the limitations of deep models for molecular property prediction: Insights and solutions
Abstract Molecular Property Prediction (MPP) is a crucial task in the AI-driven Drug
Discovery (AIDD) pipeline, which has recently gained considerable attention thanks to …
Discovery (AIDD) pipeline, which has recently gained considerable attention thanks to …
Oxy-fuel and air atmosphere combustions of Chinese medicine residues: performances, mechanisms, flue gas emission, and ash properties
Z Chen, J Liu, H Chen, Z Ding, X Tang, F Evrendilek - Renewable Energy, 2022 - Elsevier
This study aims to quantify the combustion performances, mechanisms, and ash
characteristics of Chinese medicine residues (CMR) in the air and oxy-fuel atmospheres …
characteristics of Chinese medicine residues (CMR) in the air and oxy-fuel atmospheres …
Machine learning and computational chemistry for the endocannabinoid system
Computational methods in medicinal chemistry facilitate drug discovery and design. In
particular, machine learning methodologies have recently gained increasing attention. This …
particular, machine learning methodologies have recently gained increasing attention. This …
CatNet: Sequence-based deep learning with cross-attention mechanism for identifying endocrine-disrupting chemicals
L Zhao, Q Xue, H Zhang, Y Hao, H Yi, X Liu… - Journal of Hazardous …, 2024 - Elsevier
Endocrine-disrupting chemicals (EDCs) pose significant environmental and health risks due
to their potential to interfere with nuclear receptors (NRs), key regulators of physiological …
to their potential to interfere with nuclear receptors (NRs), key regulators of physiological …
Profiling prediction of nuclear receptor modulators with multi-task deep learning methods: toward the virtual screening
J Wang, C Lou, G Liu, W Li, Z Wu… - Briefings in …, 2022 - academic.oup.com
Nuclear receptors (NRs) are ligand-activated transcription factors, which constitute one of
the most important targets for drug discovery. Current computational strategies mainly focus …
the most important targets for drug discovery. Current computational strategies mainly focus …
Parsimonious optimization of multitask neural network hyperparameters
Neural networks are rapidly gaining popularity in chemical modeling and Quantitative
Structure–Activity Relationship (QSAR) thanks to their ability to handle multitask problems …
Structure–Activity Relationship (QSAR) thanks to their ability to handle multitask problems …
Why Deep Models Often Cannot Beat Non-deep Counterparts on Molecular Property Prediction?
Molecular property prediction (MPP) is a crucial task in the drug discovery pipeline, which
has recently gained considerable attention thanks to advances in deep neural networks …
has recently gained considerable attention thanks to advances in deep neural networks …