Microbial indicators as a diagnostic tool for assessing water quality and climate stress in coral reef ecosystems

B Glasl, NS Webster, DG Bourne - Marine Biology, 2017 - Springer
Microorganisms play a fundamental role in the functioning and stability of coral reef
ecosystems. However, environmental disturbances can trigger alterations to the natural …

[HTML][HTML] Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

F Wemheuer, JA Taylor, R Daniel, E Johnston… - Environmental …, 2020 - Springer
Abstract Background Sequencing of 16S rRNA genes has become a powerful technique to
study microbial communities and their responses towards changing environmental …

[HTML][HTML] Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

H Teeling, BM Fuchs, CM Bennke, K Krüger, M Chafee… - elife, 2016 - elifesciences.org
A process of global importance in carbon cycling is the remineralization of algae biomass by
heterotrophic bacteria, most notably during massive marine algae blooms. Such blooms can …

Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

M Simon, C Scheuner, JP Meier-Kolthoff… - The ISME …, 2017 - academic.oup.com
Abstract Marine Rhodobacteraceae (Alphaproteobacteria) are key players of
biogeochemical cycling, comprise up to 30% of bacterial communities in pelagic …

Environmental DNA and RNA in aquatic community ecology: Toward methodological standardization

IV Bunholi, NR Foster, JM Casey - Environmental DNA, 2023 - Wiley Online Library
Molecular technologies have facilitated the expansion of biodiversity assessments across a
broad range of organisms and aquatic systems. Environmental DNA (eDNA) and …

[HTML][HTML] North Sea spring bloom-associated Gammaproteobacteria fill diverse heterotrophic niches

B Francis, T Urich, A Mikolasch, H Teeling… - Environmental …, 2021 - Springer
Background The planktonic bacterial community associated with spring phytoplankton
blooms in the North Sea is responsible for a large amount of carbon turnover in an …

The polar night shift: seasonal dynamics and drivers of Arctic Ocean microbiomes revealed by autonomous sampling

M Wietz, C Bienhold, K Metfies… - ISME …, 2021 - academic.oup.com
Abstract The Arctic Ocean features extreme seasonal differences in daylight, temperature,
ice cover, and mixed layer depth. However, the diversity and ecology of microbes across …

Deciphering associations between dissolved organic molecules and bacterial communities in a pelagic marine system

H Osterholz, G Singer, B Wemheuer, R Daniel… - The ISME …, 2016 - academic.oup.com
Dissolved organic matter (DOM) is the main substrate and energy source for heterotrophic
bacterioplankton. To understand the interactions between DOM and the bacterial community …

[HTML][HTML] The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to …

M Pohlner, L Dlugosch, B Wemheuer, H Mills… - Frontiers in …, 2019 - frontiersin.org
General studies on benthic microbial communities focus on fundamental biogeochemical
processes or the most abundant constituents. Thereby, minor fractions such as the …

[HTML][HTML] Significance of gene variants for the functional biogeography of the near-surface Atlantic Ocean microbiome

L Dlugosch, A Poehlein, B Wemheuer, B Pfeiffer… - Nature …, 2022 - nature.com
Microbial communities are major drivers of global elemental cycles in the oceans due to
their high abundance and enormous taxonomic and functional diversity. Recent studies …