Transformer technology in molecular science
A transformer is the foundational architecture behind large language models designed to
handle sequential data by using mechanisms of self‐attention to weigh the importance of …
handle sequential data by using mechanisms of self‐attention to weigh the importance of …
[HTML][HTML] Liquid chromatography–mass spectrometry-based metabolomics approaches for foodomics research
T Cajka - Current Opinion in Food Science, 2024 - Elsevier
Highlights•LC-MS-based metabolomics approaches for foodomics studies•Sample
preparation of diverse sample types and a multiplatform LC-MS-based approach•Data …
preparation of diverse sample types and a multiplatform LC-MS-based approach•Data …
Tandem mass spectrum prediction for small molecules using graph transformers
Tandem mass spectra capture fragmentation patterns that provide key structural information
about molecules. Although mass spectrometry is applied in many areas, the vast majority of …
about molecules. Although mass spectrometry is applied in many areas, the vast majority of …
Computational methods for processing and interpreting mass spectrometry-based metabolomics
L Perez de Souza, AR Fernie - Essays in Biochemistry, 2024 - portlandpress.com
Metabolomics has emerged as an indispensable tool for exploring complex biological
questions, providing the ability to investigate a substantial portion of the metabolome …
questions, providing the ability to investigate a substantial portion of the metabolome …
Natural Product Synthesis in the 21st Century: Beyond the Mountain Top
RA Shenvi - ACS Central Science, 2024 - ACS Publications
Research into natural products emerged from humanity's curiosity about the nature of matter
and its role in the materia medica of diverse civilizations. Plants and fungi, in particular …
and its role in the materia medica of diverse civilizations. Plants and fungi, in particular …
MassSpecGym: A benchmark for the discovery and identification of molecules
The discovery and identification of molecules in biological and environmental samples is
crucial for advancing biomedical and chemical sciences. Tandem mass spectrometry …
crucial for advancing biomedical and chemical sciences. Tandem mass spectrometry …
Jestr: Joint embedding space technique for ranking candidate molecules for the annotation of untargeted metabolomics data
Motivation: A major challenge in metabolomics is annotation: assigning molecular structures
to mass spectral fragmentation patterns. Despite recent advances in molecule-to-spectra …
to mass spectral fragmentation patterns. Despite recent advances in molecule-to-spectra …
Critical review on in silico methods for structural annotation of chemicals detected with LC/HRMS non-targeted screening
Non-targeted screening with liquid chromatography coupled to high-resolution mass
spectrometry (LC/HRMS) is increasingly leveraging in silico methods, including machine …
spectrometry (LC/HRMS) is increasingly leveraging in silico methods, including machine …
From multi-omics to predictive biomarker: AI in tumor microenvironment
L Hai, Z Jiang, H Zhang, Y Sun - Frontiers in Immunology, 2024 - frontiersin.org
In recent years, tumors have emerged as a major global health threat. An increasing number
of studies indicate that the production, development, metastasis, and elimination of tumor …
of studies indicate that the production, development, metastasis, and elimination of tumor …
基于质谱的未知次生代谢物结构解析研究进展与展望.
纪宏超, 李正艳 - Biotechnology Bulletin, 2024 - search.ebscohost.com
次生代谢产物研究对于植物生长发育, 环境适应以及人类健康和药物研发具有重要意义.
液相色谱-质谱联用平台(LC-MS) 已成为次生代谢研究的首选策略. 然而, 代谢物结构解析仍受限 …
液相色谱-质谱联用平台(LC-MS) 已成为次生代谢研究的首选策略. 然而, 代谢物结构解析仍受限 …