Control of DNA replication timing in the 3D genome

C Marchal, J Sima, DM Gilbert - Nature Reviews Molecular Cell Biology, 2019 - nature.com
The 3D organization of mammalian chromatin was described more than 30 years ago by
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …

The emerging role of chromatin remodelers in neurodevelopmental disorders: a developmental perspective

B Mossink, M Negwer, D Schubert… - Cellular and Molecular …, 2021 - Springer
Neurodevelopmental disorders (NDDs), including intellectual disability (ID) and autism
spectrum disorders (ASD), are a large group of disorders in which early insults during brain …

Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq

C Marchal, T Sasaki, D Vera, K Wilson, J Sima… - Nature protocols, 2018 - nature.com
Cycling cells duplicate their DNA content during S phase, following a defined program
called replication timing (RT). Early-and late-replicating regions differ in terms of mutation …

FOXD3 regulates pluripotent stem cell potential by simultaneously initiating and repressing enhancer activity

R Krishnakumar, AF Chen, MG Pantovich, M Danial… - Cell stem cell, 2016 - cell.com
Early development is governed by the ability of pluripotent cells to retain the full range of
developmental potential and respond accurately to developmental cues. This property is …

Mammalian DNA replication timing

AE Vouzas, DM Gilbert - Cold Spring Harbor …, 2021 - cshperspectives.cshlp.org
Immediately following the discovery of the structure of DNA and the semi-conservative
replication of the parental DNA sequence into two new DNA strands, it became apparent …

[HTML][HTML] Epigenetics and epitranscriptomics in temporal patterning of cortical neural progenitor competence

KJ Yoon, C Vissers, G Ming, H Song - The Journal of Cell Biology, 2018 - ncbi.nlm.nih.gov
During embryonic brain development, neural progenitor/stem cells (NPCs) sequentially give
rise to different subtypes of neurons and glia via a highly orchestrated process. To …

Nuclear organisation and replication timing are coupled through RIF1–PP1 interaction

S Gnan, IM Flyamer, KN Klein, E Castelli… - Nature …, 2021 - nature.com
Three-dimensional genome organisation and replication timing are known to be correlated,
however, it remains unknown whether nuclear architecture overall plays an instructive role …

[HTML][HTML] Licensing of DNA replication, cancer, pluripotency and differentiation: an interlinked world?

SC Tsaniras, N Kanellakis, IE Symeonidou… - Seminars in cell & …, 2014 - Elsevier
Recent findings provide evidence for a functional interplay between DNA replication and the
seemingly distinct areas of cancer, development and pluripotency. Protein complexes …

Autism-associated protein POGZ controls ESCs and ESC neural induction by association with esBAF

X Sun, L Cheng, Y Sun - Molecular Autism, 2022 - Springer
Background The POGZ gene has been found frequently mutated in neurodevelopmental
disorders (NDDs), particularly autism spectrum disorder (ASD) and intellectual disability (ID) …

Large-scale chromatin structure–function relationships during the cell cycle and development: insights from replication timing

V Dileep, JC Rivera-Mulia, J Sima… - Cold Spring Harbor …, 2015 - symposium.cshlp.org
Chromosome architecture has received a lot of attention since the recent development of
genome-scale methods to measure chromatin interactions (Hi-C), enabling the first …