[HTML][HTML] A global review on short peptides: frontiers and perspectives
Peptides are fragments of proteins that carry out biological functions. They act as signaling
entities via all domains of life and interfere with protein-protein interactions, which are …
entities via all domains of life and interfere with protein-protein interactions, which are …
[PDF][PDF] Large-scale analyses of human microbiomes reveal thousands of small, novel genes
Small proteins are traditionally overlooked due to computational and experimental
difficulties in detecting them. To systematically identify small proteins, we carried out a …
difficulties in detecting them. To systematically identify small proteins, we carried out a …
Small proteins encoded by unannotated ORFs are rising stars of the proteome, confirming shortcomings in genome annotations and current vision of an mRNA
Short ORF‐encoded peptides and small proteins in eukaryotes have been hiding in the
shadow of large proteins for a long time. Recently, improved identifications in MS‐based …
shadow of large proteins for a long time. Recently, improved identifications in MS‐based …
[PDF][PDF] Thousands of small, novel genes predicted in global phage genomes
Summary Small genes (< 150 nucleotides) have been systematically overlooked in phage
genomes. We employ a large-scale comparative genomics approach to predict> 40,000 …
genomes. We employ a large-scale comparative genomics approach to predict> 40,000 …
No one tool to rule them all: prokaryotic gene prediction tool annotations are highly dependent on the organism of study
Abstract Motivation The biases in CoDing Sequence (CDS) prediction tools, which have
been based on historic genomic annotations from model organisms, impact our …
been based on historic genomic annotations from model organisms, impact our …
[HTML][HTML] Protein length distribution is remarkably uniform across the tree of life
Background In every living species, the function of a protein depends on its organization of
structural domains, and the length of a protein is a direct reflection of this. Because every …
structural domains, and the length of a protein is a direct reflection of this. Because every …
SmProt: a database of small proteins encoded by annotated coding and non-coding RNA loci
Small proteins is the general term for proteins with length shorter than 100 amino acids.
Identification and functional studies of small proteins have advanced rapidly in recent years …
Identification and functional studies of small proteins have advanced rapidly in recent years …
[HTML][HTML] Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)
J Babski, KA Haas, D Näther-Schindler, F Pfeiffer… - BMC genomics, 2016 - Springer
Abstract Background Differential RNA-Seq (dRNA-Seq) is a recently developed method of
performing primary transcriptome analyses that allows for the genome-wide mapping of …
performing primary transcriptome analyses that allows for the genome-wide mapping of …
A metabolic pathway for catabolizing levulinic acid in bacteria
Microorganisms can catabolize a wide range of organic compounds and therefore have the
potential to perform many industrially relevant bioconversions. One barrier to realizing the …
potential to perform many industrially relevant bioconversions. One barrier to realizing the …
[HTML][HTML] The molecular mass and isoelectric point of plant proteomes
Background Cell contain diverse array of proteins with different molecular weight and
isoelectric point (pI). The molecular weight and pI of protein play important role in …
isoelectric point (pI). The molecular weight and pI of protein play important role in …