Regulation of glycolytic flux and overflow metabolism depending on the source of energy generation for energy demand
K Shimizu, Y Matsuoka - Biotechnology advances, 2019 - Elsevier
Overflow metabolism is a common phenomenon observed at higher glycolytic flux in many
bacteria, yeast (known as Crabtree effect), and mammalian cells including cancer cells …
bacteria, yeast (known as Crabtree effect), and mammalian cells including cancer cells …
The independence of research—a review of disciplinary perspectives and outline of interdisciplinary prospects
J Gläser, M Ash, G Buenstorf, D Hopf, L Hubenschmid… - Minerva, 2022 - Springer
The independence of research is a key strategic issue of modern societies. Dealing with it
appropriately poses legal, economic, political, social and cultural problems for society, which …
appropriately poses legal, economic, political, social and cultural problems for society, which …
Cellular perception of growth rate and the mechanistic origin of bacterial growth law
C Wu, R Balakrishnan, N Braniff… - Proceedings of the …, 2022 - National Acad Sciences
Many cellular activities in bacteria are organized according to their growth rate. The notion
that ppGpp measures the cell's growth rate is well accepted in the field of bacterial …
that ppGpp measures the cell's growth rate is well accepted in the field of bacterial …
Engineering new-to-nature biochemical conversions by combining fermentative metabolism with respiratory modules
H Schulz-Mirbach, JL Krüsemann, T Andreadaki… - Nature …, 2024 - nature.com
Anaerobic microbial fermentations provide high product yields and are a cornerstone of
industrial bio-based processes. However, the need for redox balancing limits the array of …
industrial bio-based processes. However, the need for redox balancing limits the array of …
Measuring and modeling energy and power consumption in living microbial cells with a synthetic ATP reporter
Background Adenosine triphosphate (ATP) is the main energy carrier in living organisms,
critical for metabolism and essential physiological processes. In humans, abnormal …
critical for metabolism and essential physiological processes. In humans, abnormal …
Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield
Microbes may maximize the number of daughter cells per time or per amount of nutrients
consumed. These two strategies correspond, respectively, to the use of enzyme-efficient or …
consumed. These two strategies correspond, respectively, to the use of enzyme-efficient or …
[HTML][HTML] A bacterial growth law out of steady state
YK Kohanim, D Levi, G Jona, BD Towbin, A Bren… - Cell reports, 2018 - cell.com
Bacterial growth follows simple laws in constant conditions. However, bacteria in nature
often face fluctuating environments. We therefore ask whether there are growth laws that …
often face fluctuating environments. We therefore ask whether there are growth laws that …
[HTML][HTML] A pulse of simulated root exudation alters the composition and temporal dynamics of microbial metabolites in its immediate vicinity
J Wiesenbauer, A König, S Gorka, L Marchand… - Soil Biology and …, 2024 - Elsevier
Root exudation increases the concentration of readily available carbon (C) compounds in its
immediate environment. This creates 'hotspots' of microbial activity characterized by …
immediate environment. This creates 'hotspots' of microbial activity characterized by …
Redox rebalance against genetic perturbations and modulation of central carbon metabolism by the oxidative stress regulation
K Shimizu, Y Matsuoka - Biotechnology advances, 2019 - Elsevier
The micro-aerophilic organisms and aerobes as well as yeast and higher organisms have
evolved to gain energy through respiration (via oxidative phosphorylation), thereby enabling …
evolved to gain energy through respiration (via oxidative phosphorylation), thereby enabling …
Functional Decomposition of Metabolism allows a system-level quantification of fluxes and protein allocation towards specific metabolic functions
Quantifying the contribution of individual molecular components to complex cellular
processes is a grand challenge in systems biology. Here we establish a general theoretical …
processes is a grand challenge in systems biology. Here we establish a general theoretical …